Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NU955_RS16385 Genome accession   NZ_CP102762
Coordinates   3446670..3447143 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3441670..3452143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS16370 pilX 3444299..3445117 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NU955_RS16375 pilW 3445114..3446115 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NU955_RS16380 pilV 3446116..3446676 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NU955_RS16385 fimU 3446670..3447143 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NU955_RS16390 ispH 3447313..3448263 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NU955_RS16395 gmk 3448386..3449015 (+) 630 WP_000015937.1 guanylate kinase -
  NU955_RS16400 rpoZ 3449088..3449366 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NU955_RS16405 - 3449405..3449535 (+) 131 Protein_3194 hypothetical protein -
  NU955_RS16410 - 3449575..3451680 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=718868 NU955_RS16385 WP_001214065.1 3446670..3447143(-) (fimU) [Acinetobacter baumannii strain AOR07-BL]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=718868 NU955_RS16385 WP_001214065.1 3446670..3447143(-) (fimU) [Acinetobacter baumannii strain AOR07-BL]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1