Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NU955_RS16370 Genome accession   NZ_CP102762
Coordinates   3444299..3445117 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439299..3450117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS16355 pilE 3439525..3439950 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  NU955_RS16360 pilY2 3439947..3440429 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NU955_RS16365 pilY1 3440442..3444287 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  NU955_RS16370 pilX 3444299..3445117 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NU955_RS16375 pilW 3445114..3446115 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NU955_RS16380 pilV 3446116..3446676 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NU955_RS16385 fimU 3446670..3447143 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NU955_RS16390 ispH 3447313..3448263 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NU955_RS16395 gmk 3448386..3449015 (+) 630 WP_000015937.1 guanylate kinase -
  NU955_RS16400 rpoZ 3449088..3449366 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NU955_RS16405 - 3449405..3449535 (+) 131 Protein_3194 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=718865 NU955_RS16370 WP_000149376.1 3444299..3445117(-) (pilX) [Acinetobacter baumannii strain AOR07-BL]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=718865 NU955_RS16370 WP_000149376.1 3444299..3445117(-) (pilX) [Acinetobacter baumannii strain AOR07-BL]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989