Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   NU955_RS16360 Genome accession   NZ_CP102762
Coordinates   3439947..3440429 (-) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3434947..3445429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS16325 - 3435057..3436088 (+) 1032 WP_001189457.1 lipase secretion chaperone -
  NU955_RS16330 - 3436203..3437144 (+) 942 WP_097355459.1 lipase family alpha/beta hydrolase -
  NU955_RS16335 rplS 3437197..3437565 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  NU955_RS16340 trmD 3437773..3438513 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NU955_RS16345 rimM 3438559..3439107 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  NU955_RS16350 rpsP 3439127..3439378 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  NU955_RS16355 pilE 3439525..3439950 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  NU955_RS16360 pilY2 3439947..3440429 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NU955_RS16365 pilY1 3440442..3444287 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  NU955_RS16370 pilX 3444299..3445117 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=718863 NU955_RS16360 WP_001046423.1 3439947..3440429(-) (pilY2) [Acinetobacter baumannii strain AOR07-BL]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=718863 NU955_RS16360 WP_001046423.1 3439947..3440429(-) (pilY2) [Acinetobacter baumannii strain AOR07-BL]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419