Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NU955_RS00805 Genome accession   NZ_CP102762
Coordinates   174062..175192 (-) Length   376 a.a.
NCBI ID   WP_031945845.1    Uniprot ID   A0A9E9ME63
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 169062..180192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS00780 - 169237..170001 (-) 765 WP_030423767.1 AraC family transcriptional regulator -
  NU955_RS00785 - 170023..171237 (-) 1215 WP_030423766.1 MFS transporter -
  NU955_RS00790 - 171374..172024 (+) 651 WP_109850634.1 TetR/AcrR family transcriptional regulator -
  NU955_RS00795 - 172130..173050 (+) 921 WP_002042168.1 DMT family transporter -
  NU955_RS00800 - 173442..174011 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  NU955_RS00805 dprA 174062..175192 (-) 1131 WP_031945845.1 DNA-processing protein DprA Machinery gene
  NU955_RS00810 tsaP 175213..176367 (-) 1155 WP_005129904.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NU955_RS00815 def 176490..177020 (+) 531 WP_001196539.1 peptide deformylase -
  NU955_RS00820 - 177057..177485 (+) 429 WP_000231981.1 DUF2946 family protein -
  NU955_RS00825 - 177558..179672 (+) 2115 WP_030423765.1 TonB-dependent copper receptor -
  NU955_RS00830 - 179726..179932 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41860.38 Da        Isoelectric Point: 6.4984

>NTDB_id=718832 NU955_RS00805 WP_031945845.1 174062..175192(-) (dprA) [Acinetobacter baumannii strain AOR07-BL]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=718832 NU955_RS00805 WP_031945845.1 174062..175192(-) (dprA) [Acinetobacter baumannii strain AOR07-BL]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGCGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTACAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCAACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.404

100

0.984

  dprA Acinetobacter baumannii D1279779

98.138

100

0.981

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383