Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NU955_RS00810 Genome accession   NZ_CP102762
Coordinates   175213..176367 (-) Length   384 a.a.
NCBI ID   WP_005129904.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170213..181367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS00790 - 171374..172024 (+) 651 WP_109850634.1 TetR/AcrR family transcriptional regulator -
  NU955_RS00795 - 172130..173050 (+) 921 WP_002042168.1 DMT family transporter -
  NU955_RS00800 - 173442..174011 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  NU955_RS00805 dprA 174062..175192 (-) 1131 WP_031945845.1 DNA-processing protein DprA Machinery gene
  NU955_RS00810 tsaP 175213..176367 (-) 1155 WP_005129904.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NU955_RS00815 def 176490..177020 (+) 531 WP_001196539.1 peptide deformylase -
  NU955_RS00820 - 177057..177485 (+) 429 WP_000231981.1 DUF2946 family protein -
  NU955_RS00825 - 177558..179672 (+) 2115 WP_030423765.1 TonB-dependent copper receptor -
  NU955_RS00830 - 179726..179932 (+) 207 WP_000182542.1 hypothetical protein -
  NU955_RS00835 - 180001..181215 (-) 1215 WP_005129900.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42373.31 Da        Isoelectric Point: 8.5841

>NTDB_id=718833 NU955_RS00810 WP_005129904.1 175213..176367(-) (tsaP) [Acinetobacter baumannii strain AOR07-BL]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=718833 NU955_RS00810 WP_005129904.1 175213..176367(-) (tsaP) [Acinetobacter baumannii strain AOR07-BL]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGTGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.74

100

0.997