Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NV347_RS17705 Genome accession   NZ_CP102749
Coordinates   3915027..3915587 (+) Length   186 a.a.
NCBI ID   WP_039483661.1    Uniprot ID   -
Organism   Pectobacterium parvum strain YT22221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3910027..3920587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV347_RS17685 (NV347_17685) - 3910109..3910294 (-) 186 Protein_3457 YitT family protein -
  NV347_RS17690 (NV347_17690) - 3910545..3911024 (-) 480 WP_039483666.1 Lrp/AsnC family transcriptional regulator -
  NV347_RS17695 (NV347_17695) - 3911433..3911852 (-) 420 WP_039513034.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NV347_RS17700 (NV347_17700) uvrA 3911868..3914702 (-) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  NV347_RS17705 (NV347_17705) ssb 3915027..3915587 (+) 561 WP_039483661.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NV347_RS17710 (NV347_17710) - 3916171..3916452 (+) 282 WP_039483659.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19670.63 Da        Isoelectric Point: 5.2456

>NTDB_id=718795 NV347_RS17705 WP_039483661.1 3915027..3915587(+) (ssb) [Pectobacterium parvum strain YT22221]
MASRGVNKVILVGNLGQDPEIRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNNASANNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=718795 NV347_RS17705 WP_039483661.1 3915027..3915587(+) (ssb) [Pectobacterium parvum strain YT22221]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAATCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGCGTGGTCCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAAGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGTGCGCAGTCTCAACAGCGTCCTGCA
CAGAACAATGCTTCCGCAAACAATGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.745

100

0.715
  ssb Glaesserella parasuis strain SC1401

55.497

100

0.57
  ssb Neisseria meningitidis MC58

45.652

98.925

0.452
  ssb Neisseria gonorrhoeae MS11

45.652

98.925

0.452
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.912

97.849

0.371