Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   NWE22_RS00370 Genome accession   NZ_CP102747
Coordinates   62702..63604 (+) Length   300 a.a.
NCBI ID   WP_239604412.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 57702..68604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS00340 (NWE22_00340) - 57991..58737 (-) 747 WP_277745487.1 amino acid ABC transporter ATP-binding protein -
  NWE22_RS00345 (NWE22_00345) - 58742..59419 (-) 678 WP_024392848.1 amino acid ABC transporter permease -
  NWE22_RS00350 (NWE22_00350) - 59400..60059 (-) 660 WP_239604822.1 amino acid ABC transporter permease -
  NWE22_RS00355 (NWE22_00355) ruvB 60187..61185 (+) 999 WP_172036453.1 Holliday junction branch migration DNA helicase RuvB -
  NWE22_RS00360 (NWE22_00360) - 61185..61931 (+) 747 WP_239604411.1 GNAT family N-acetyltransferase -
  NWE22_RS00365 (NWE22_00365) - 61933..62547 (+) 615 WP_171989017.1 HAD-IA family hydrolase -
  NWE22_RS00370 (NWE22_00370) comR 62702..63604 (+) 903 WP_239604412.1 transcriptional regulator Regulator
  NWE22_RS00375 (NWE22_00375) - 63813..65048 (+) 1236 WP_239604413.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NWE22_RS00380 (NWE22_00380) - 65216..66736 (+) 1521 WP_239604414.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35908.84 Da        Isoelectric Point: 4.6012

>NTDB_id=718672 NWE22_RS00370 WP_239604412.1 62702..63604(+) (comR) [Streptococcus parasuis strain SFJ45]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRDQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRDRDTDATIYHYFSSLITHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=718672 NWE22_RS00370 WP_239604412.1 62702..63604(+) (comR) [Streptococcus parasuis strain SFJ45]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCGATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCTACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAGATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TATTACCCACCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGAGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACAGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

62.542

99.667

0.623
  comR Streptococcus suis 05ZYH33

62.542

99.667

0.623
  comR Streptococcus suis D9

57.143

100

0.573
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.869

96.333

0.403
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39