Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NVV61_RS00190 Genome accession   NZ_CP102627
Coordinates   41719..42258 (+) Length   179 a.a.
NCBI ID   WP_003759533.1    Uniprot ID   A0A6B0JGK2
Organism   Listeria innocua strain F4078     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 36719..47258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV61_RS00170 (NVV61_00170) - 37838..38923 (+) 1086 WP_010990167.1 SIS domain-containing protein -
  NVV61_RS00175 (NVV61_00175) - 39126..39785 (+) 660 WP_010990168.1 DedA family protein -
  NVV61_RS00180 (NVV61_00180) arcA 39858..41090 (+) 1233 WP_077904844.1 arginine deiminase -
  NVV61_RS00185 (NVV61_00185) rpsF 41370..41663 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  NVV61_RS00190 (NVV61_00190) ssbA 41719..42258 (+) 540 WP_003759533.1 single-stranded DNA-binding protein Machinery gene
  NVV61_RS00195 (NVV61_00195) rpsR 42302..42541 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  NVV61_RS00200 (NVV61_00200) - 42697..43308 (+) 612 WP_003759535.1 PepSY domain-containing protein -
  NVV61_RS00205 (NVV61_00205) - 43564..44178 (+) 615 WP_003764750.1 accessory gene regulator ArgB-like protein -
  NVV61_RS00210 (NVV61_00210) - 44162..44323 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  NVV61_RS00215 (NVV61_00215) - 44419..45714 (+) 1296 WP_010990170.1 sensor histidine kinase -
  NVV61_RS00220 (NVV61_00220) - 45733..46461 (+) 729 WP_003759538.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19604.25 Da        Isoelectric Point: 4.7306

>NTDB_id=718199 NVV61_RS00190 WP_003759533.1 41719..42258(+) (ssbA) [Listeria innocua strain F4078]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGGNNNNNYNNGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNN
DPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=718199 NVV61_RS00190 WP_003759533.1 41719..42258(+) (ssbA) [Listeria innocua strain F4078]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACCTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGCCGGGTTCAAACTCGT
AATTACGAGGGAAACGATGGCAAACGTGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAACCGCGCAA
TTCTAATGGCGGTGGCGGAAATAATAACTATCAAGGCGGAAATAACAACAATAATTATAATAACGGTGGAAATAACTTCG
GACAAGCACCTACTAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAAT
GATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B0JGK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.039

100

0.67
  ssb Latilactobacillus sakei subsp. sakei 23K

54.645

100

0.559
  ssb Vibrio cholerae strain A1552

33.673

100

0.369
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.218

0.363
  ssb Glaesserella parasuis strain SC1401

34.946

100

0.363