Detailed information NTG0718152

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: NT239_RS10465
• Genome accession: NZ_CP102611
• Coordinates: 2241635..2242825 (+)
• Length: 396 a.a.
• NCBI ID: WP_373974065.1
• Uniprot ID: -
• Organism: Chitinibacter sp. SCUT-21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2236635..2247825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NT239_RS10450 (NT239_10450)	-	2237300..2238457 (-)	1158	WP_373974062.1	iron-containing alcohol dehydrogenase	-
NT239_RS10455 (NT239_10455)	-	2238665..2239243 (-)	579	WP_373974063.1	TetR/AcrR family transcriptional regulator	-
NT239_RS10460 (NT239_10460)	-	2239534..2241510 (+)	1977	WP_373974064.1	amidohydrolase	-
NT239_RS10465 (NT239_10465)	pilU	2241635..2242825 (+)	1191	WP_373974065.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
NT239_RS10470 (NT239_10470)	secA	2242931..2245672 (-)	2742	WP_373974066.1	preprotein translocase subunit SecA	-
NT239_RS10475 (NT239_10475)	-	2245788..2246672 (-)	885	WP_373974067.1	M23 family metallopeptidase	-
NT239_RS10480 (NT239_10480)	-	2246687..2247118 (+)	432	WP_373974068.1	DciA family protein	-

Sequence

Protein

• Length: 396 a.a.
• Molecular weight: 44624.39 Da
• Isoelectric Point: 6.2781

>NTDB_id=718152 NT239_RS10465 WP_373974065.1 2241635..2242825(+) (pilU) [Chitinibacter sp. SCUT-21]
MSPEQALKTMHDLLRMMIQHKASDLFIADDFPPAMKINGKMTPVGQQKLNAVATRALAYAIMRPDQRAEFEEEFECNFAI
SPEGIGRFRVNVFMQQEKVGMVLRTITSKIPNFDEMGLPKILKEVMMSKRGLVLLVGGTGSGKSTTMAAMIDYRNENSHG
HIITIEDPVEYLHKNKNCLITHREVGRDTKGWFNALKNTLRQAPDVILIGEIRDRETMEYAMNFAETGHLCMGTLHANSS
NQALERIVNFFPEERHPQLYMDLSLNMRGIISQRLVPTPDGKGRCAAIEILLNTPLVADMIFKGDVGGVKTAMQKSRELG
MQTFDMALFDLYEAGKISMEEALKNADSLNELRLNIKLNSKHHRKEEHSSGLDHLSLEVHEEPEVVEEGAEGEKKE

Nucleotide

• Length: 1191 bp

>NTDB_id=718152 NT239_RS10465 WP_373974065.1 2241635..2242825(+) (pilU) [Chitinibacter sp. SCUT-21]
ATGAGCCCAGAACAAGCCCTGAAAACCATGCACGATTTATTGCGGATGATGATTCAGCATAAAGCGTCCGATTTATTTAT
TGCTGATGATTTCCCGCCTGCGATGAAGATTAACGGCAAGATGACGCCGGTGGGGCAGCAAAAGCTCAATGCCGTTGCAA
CGCGGGCCTTGGCTTACGCGATTATGCGGCCCGATCAGCGTGCCGAATTTGAAGAAGAATTTGAATGCAATTTCGCGATC
AGCCCCGAAGGCATCGGGCGCTTTCGCGTGAATGTGTTTATGCAGCAAGAAAAAGTCGGCATGGTGCTGCGCACGATCAC
CAGCAAGATCCCCAATTTCGATGAAATGGGGCTGCCGAAGATTTTAAAAGAAGTGATGATGAGCAAGCGCGGGCTGGTGC
TGCTGGTGGGCGGCACTGGTTCGGGTAAATCAACGACGATGGCGGCGATGATTGATTATCGCAATGAAAACAGCCACGGC
CATATCATCACGATTGAAGACCCCGTTGAATACCTGCATAAAAACAAAAACTGTCTGATTACACACCGCGAAGTCGGGCG
CGATACCAAGGGCTGGTTTAATGCGCTGAAAAACACGCTACGCCAAGCGCCGGATGTGATTTTGATTGGCGAGATTCGCG
ACCGTGAAACAATGGAATACGCGATGAATTTCGCCGAAACCGGCCATTTGTGCATGGGCACGCTGCACGCGAATAGCTCA
AATCAGGCACTCGAGCGGATTGTGAATTTCTTCCCCGAAGAGCGCCACCCGCAACTGTATATGGATTTATCGCTGAATAT
GCGCGGCATTATCTCGCAACGCTTGGTGCCGACGCCCGACGGGAAGGGGCGCTGCGCTGCGATTGAGATTTTGCTCAATA
CGCCGCTGGTCGCCGATATGATTTTCAAAGGCGACGTTGGCGGCGTGAAAACCGCGATGCAAAAATCGCGCGAGCTAGGC
ATGCAGACCTTTGATATGGCGCTATTTGATTTGTACGAAGCGGGCAAAATCAGCATGGAAGAAGCGCTGAAAAATGCCGA
CTCGCTGAACGAATTGCGTTTGAATATTAAGCTCAATAGCAAGCATCATCGCAAAGAAGAGCACAGTAGCGGCTTGGATC
ATTTGTCGCTGGAAGTGCACGAAGAGCCTGAAGTGGTGGAAGAGGGCGCTGAGGGTGAGAAAAAAGAATAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (112-277)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.873	93.687	0.533
pilU	Acinetobacter baylyi ADP1	56.98	88.636	0.505
pilU	Vibrio cholerae strain A1552	51.549	89.646	0.462
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.917	85.101	0.374
pilT	Pseudomonas aeruginosa PAK	43.284	84.596	0.366