Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KQ693_RS00225 Genome accession   NZ_CP102606
Coordinates   43713..45890 (+) Length   725 a.a.
NCBI ID   WP_267261566.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 38713..50890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS00200 (KQ693_00200) - 39206..40210 (+) 1005 WP_267261562.1 homoisocitrate dehydrogenase -
  KQ693_RS00205 (KQ693_00205) pilM 40402..41535 (+) 1134 WP_219760144.1 type IV pilus assembly protein PilM Machinery gene
  KQ693_RS00210 (KQ693_00210) pilN 41528..42151 (+) 624 WP_267261563.1 flagellar protein FliT Machinery gene
  KQ693_RS00215 (KQ693_00215) pilO 42141..42764 (+) 624 WP_267261564.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ693_RS00220 (KQ693_00220) pilW 42761..43732 (+) 972 WP_267261565.1 competence protein Machinery gene
  KQ693_RS00225 (KQ693_00225) pilQ 43713..45890 (+) 2178 WP_267261566.1 secretin N-terminal domain-containing protein Machinery gene
  KQ693_RS00230 (KQ693_00230) aroC 45994..47145 (+) 1152 WP_267261567.1 chorismate synthase -
  KQ693_RS00235 (KQ693_00235) - 47163..47717 (+) 555 WP_028493414.1 shikimate kinase -
  KQ693_RS00240 (KQ693_00240) - 47695..48750 (+) 1056 WP_267261568.1 3-dehydroquinate synthase -
  KQ693_RS00245 (KQ693_00245) - 48762..48989 (+) 228 WP_028493416.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  KQ693_RS00250 (KQ693_00250) - 48977..49372 (+) 396 WP_267261569.1 type II toxin-antitoxin system VapC family toxin -
  KQ693_RS00255 (KQ693_00255) rsmF 49378..50745 (-) 1368 WP_267261570.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 79507.21 Da        Isoelectric Point: 5.4128

>NTDB_id=718105 KQ693_RS00225 WP_267261566.1 43713..45890(+) (pilQ) [Thermus sp. PS18]
MDLKVSESQVRAGLTLPLDVVLEALARSVGLQPLIYRAYDASGDPAKAQPPLPNIKLDFQGKPFREVWDLLFATYGTQFN
LDYLLLPPDVVVVAPTQVITALVDAPSRTGAMERKPYLVAIPEIAYRRTETDAQGQARTVVNIDGAKGWVQNDLLPFLSR
EASGLSVNWIVVEEGGKLRALLSVLATPEQHVRFSDILQRAGIDFRPLPALTLPKTKVERSYILTHTTFPEVLSFLQTQV
PNAQVAVVPTDPKRALITATEEDHARIAELLKVADVPKPTPMVRRVYTLQNLTFQEAQERLKPVLERELKGARLEGVPGN
PKALLLEATEADQAFFAEVLKAADVPPQVAPPTQETTVRRLYPLRFADAEKVAPFLAREVPGIVVQTVPGQPVLSVRGTE
KQLSEVENLLAQIDRAPEQGPPVFQRSYQLSNAKAADLAKVLQEALQARQAQAPQGQAQPQAPTRQATVVADERTNTLIV
TGTQEDLALVEGLIPKLDQAVPQVNLRVRIQEVQSNFSRNLGLKWNTIAGGNVAASILDTGLSLIFDSTRSLAALNIIAT
LEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVVGDRVERVPFDIGIIVEVTPQITADGQILLNIKAEVSGNVQ
RNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGGLTSQENNQVQQGVPLLMDIPLIGELFKQRTQETTDRELLVVITADILK
ETASR

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=718105 KQ693_RS00225 WP_267261566.1 43713..45890(+) (pilQ) [Thermus sp. PS18]
GTGGACCTGAAGGTTTCTGAAAGCCAGGTGCGGGCCGGGCTCACCCTGCCCCTGGACGTGGTCCTGGAAGCCCTGGCCCG
GAGCGTGGGCCTTCAGCCCCTTATCTACCGGGCCTACGATGCCTCCGGCGACCCGGCCAAGGCCCAGCCCCCCTTACCCA
ACATCAAGCTGGACTTCCAGGGCAAACCCTTCCGGGAAGTCTGGGACCTCCTCTTCGCCACCTACGGCACCCAGTTCAAC
CTGGACTACCTCCTCCTGCCTCCCGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCACCGCCTTGGTGGACGCCCCAAG
CCGCACCGGGGCCATGGAGCGGAAGCCCTACCTGGTGGCCATCCCCGAGATCGCCTACCGGCGCACGGAAACCGACGCCC
AGGGCCAGGCCCGCACCGTGGTGAACATAGATGGGGCCAAGGGCTGGGTGCAAAACGATCTCCTGCCCTTCCTTTCCCGG
GAAGCCAGCGGGCTTAGCGTGAACTGGATTGTCGTAGAGGAAGGGGGCAAACTCAGGGCCCTACTCTCTGTCCTGGCCAC
CCCAGAACAGCACGTTCGCTTCTCGGACATCCTTCAGCGGGCTGGGATTGACTTCCGCCCCCTACCCGCCCTCACCTTAC
CCAAAACAAAGGTGGAGCGGAGCTATATCCTCACCCACACCACCTTCCCCGAGGTGCTTTCCTTCCTGCAAACACAGGTC
CCGAACGCCCAGGTGGCCGTGGTTCCCACCGACCCCAAACGGGCCCTCATCACCGCCACCGAGGAGGACCACGCCCGCAT
CGCCGAACTCCTAAAGGTGGCCGATGTACCCAAGCCCACCCCCATGGTGCGCCGGGTCTACACCTTGCAGAACCTCACTT
TCCAGGAAGCCCAGGAAAGGCTTAAGCCCGTCCTGGAAAGGGAGTTGAAAGGGGCTCGCCTGGAAGGTGTCCCGGGTAAC
CCCAAAGCCCTTCTTCTGGAGGCTACCGAAGCCGACCAGGCCTTCTTCGCCGAGGTCCTCAAGGCCGCCGATGTGCCTCC
CCAGGTGGCCCCGCCCACCCAGGAGACCACGGTGCGGAGGCTCTACCCCTTGCGCTTCGCCGATGCTGAAAAGGTAGCTC
CCTTCCTGGCCCGGGAGGTACCGGGGATCGTGGTGCAGACGGTGCCCGGGCAACCTGTCCTCTCCGTGCGGGGAACGGAG
AAACAACTTTCTGAAGTGGAGAACCTCCTGGCTCAGATCGACCGGGCTCCCGAGCAGGGGCCACCTGTCTTCCAGCGCTC
CTACCAGCTCTCCAACGCCAAGGCCGCCGACCTGGCCAAGGTGCTCCAGGAGGCCTTGCAAGCCCGGCAGGCCCAGGCTC
CCCAGGGCCAGGCCCAGCCCCAAGCCCCCACACGCCAGGCCACGGTGGTGGCGGACGAGCGCACCAATACCCTGATCGTC
ACGGGCACGCAGGAGGATCTAGCCCTGGTGGAAGGCCTTATTCCCAAGCTGGACCAGGCAGTGCCCCAGGTGAACCTGAG
GGTGCGCATCCAGGAGGTGCAGTCCAACTTCAGCCGAAACCTGGGCCTCAAGTGGAACACCATTGCCGGGGGAAATGTGG
CGGCCAGCATCCTGGACACGGGGCTTTCCCTTATCTTTGACAGCACCCGGAGCCTGGCTGCCCTGAACATCATCGCCACC
CTCGAGGCCCTCCAGCGCCAGGGCCTTTCCCGAGCCCTTAGGGATGTGAACCAAACCGTGCTCAACAACCAGACCGCCCG
CCTGCAGTCCGGGGAAACCTTCCTCATCCGCCGGGTGGTGGGGGACCGGGTGGAGCGGGTACCCTTCGACATCGGCATCA
TCGTGGAGGTGACTCCCCAGATCACCGCCGACGGGCAGATCCTCCTCAACATCAAGGCGGAAGTTTCCGGGAACGTCCAG
CGCAACCCCGTGGACGGGGATGTGGACCGCTTCACCAAGCAGGTGGTGACCACCACCCTGCGGGTGCGGGATGGGCAGAC
CGTGGTCCTCGGGGGTCTCACTTCCCAGGAAAACAACCAGGTGCAGCAGGGAGTTCCCCTCCTTATGGATATCCCCCTGA
TCGGGGAACTCTTCAAACAACGCACCCAGGAAACCACCGACCGGGAGCTTCTGGTAGTCATCACCGCCGACATCTTGAAG
GAAACCGCAAGCCGCTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(426-503)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-419)

Bacterial type II and III secretion system protein (Secretin)

(563-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Thermus thermophilus HB27

83.564

99.862

0.834