Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PSH70_RS08220 Genome accession   NZ_CP117438
Coordinates   1827877..1828209 (+) Length   110 a.a.
NCBI ID   WP_169875855.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FP2327     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822877..1833209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS08205 (PSH70_08200) - 1823874..1824980 (+) 1107 WP_073636972.1 acyltransferase -
  PSH70_RS08210 (PSH70_08205) - 1825006..1825566 (+) 561 WP_053255114.1 sugar transferase -
  PSH70_RS08215 (PSH70_08210) - 1825683..1827680 (+) 1998 WP_162232018.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  PSH70_RS08220 (PSH70_08215) comEA/comE1 1827877..1828209 (+) 333 WP_169875855.1 helix-hairpin-helix domain-containing protein Machinery gene
  PSH70_RS08225 (PSH70_08220) - 1828232..1828810 (-) 579 WP_053255116.1 TetR/AcrR family transcriptional regulator -
  PSH70_RS08230 (PSH70_08225) - 1828944..1829588 (+) 645 WP_305793300.1 GntR family transcriptional regulator -
  PSH70_RS08235 (PSH70_08230) - 1829604..1830452 (+) 849 WP_053255118.1 DUF1989 domain-containing protein -
  PSH70_RS08240 (PSH70_08235) - 1830461..1830628 (-) 168 WP_064502997.1 DUF2897 family protein -
  PSH70_RS08245 (PSH70_08240) eat 1830740..1832104 (-) 1365 WP_053255119.1 ethanolamine permease -
  PSH70_RS08250 (PSH70_08245) kdpF 1832498..1832587 (+) 90 WP_003218754.1 K(+)-transporting ATPase subunit F -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11615.41 Da        Isoelectric Point: 9.7672

>NTDB_id=718102 PSH70_RS08220 WP_169875855.1 1827877..1828209(+) (comEA/comE1) [Pseudomonas fluorescens strain FP2327]
MQKTSISSLIFAFLASISVAATAAPSVKTEAPTPIAAQMTKVEQSAQVNLNAADAETLRRDLFGIGAAKAKAIIAYRESN
GPFTAVDELLEVKGIGKALLEKNRDRLVVN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=718102 PSH70_RS08220 WP_169875855.1 1827877..1828209(+) (comEA/comE1) [Pseudomonas fluorescens strain FP2327]
ATGCAAAAAACCTCTATCTCTTCCCTGATCTTTGCCTTCCTCGCGAGCATCTCCGTAGCGGCCACGGCTGCCCCGTCTGT
CAAAACCGAAGCCCCCACTCCGATCGCTGCACAGATGACCAAGGTTGAGCAATCTGCCCAGGTCAACCTGAACGCTGCCG
ATGCGGAAACCCTGCGCCGCGACCTGTTTGGTATTGGCGCCGCCAAGGCGAAGGCGATCATCGCGTATCGTGAAAGTAAT
GGCCCCTTCACGGCGGTGGATGAGTTGCTGGAAGTAAAAGGTATCGGTAAAGCGTTGCTGGAGAAGAACCGCGACAGGCT
GGTGGTCAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(45-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.905

95.455

0.4
  comE1/comEA Haemophilus influenzae Rd KW20

47.126

79.091

0.373