Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   KQ693_RS00220 Genome accession   NZ_CP102606
Coordinates   42761..43732 (+) Length   323 a.a.
NCBI ID   WP_267261565.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 37761..48732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS00195 (KQ693_00195) - 38624..39133 (+) 510 WP_267262389.1 DUF5317 domain-containing protein -
  KQ693_RS00200 (KQ693_00200) - 39206..40210 (+) 1005 WP_267261562.1 homoisocitrate dehydrogenase -
  KQ693_RS00205 (KQ693_00205) pilM 40402..41535 (+) 1134 WP_219760144.1 type IV pilus assembly protein PilM Machinery gene
  KQ693_RS00210 (KQ693_00210) pilN 41528..42151 (+) 624 WP_267261563.1 flagellar protein FliT Machinery gene
  KQ693_RS00215 (KQ693_00215) pilO 42141..42764 (+) 624 WP_267261564.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ693_RS00220 (KQ693_00220) pilW 42761..43732 (+) 972 WP_267261565.1 competence protein Machinery gene
  KQ693_RS00225 (KQ693_00225) pilQ 43713..45890 (+) 2178 WP_267261566.1 secretin N-terminal domain-containing protein Machinery gene
  KQ693_RS00230 (KQ693_00230) aroC 45994..47145 (+) 1152 WP_267261567.1 chorismate synthase -
  KQ693_RS00235 (KQ693_00235) - 47163..47717 (+) 555 WP_028493414.1 shikimate kinase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 33276.79 Da        Isoelectric Point: 5.4688

>NTDB_id=718104 KQ693_RS00220 WP_267261565.1 42761..43732(+) (pilW) [Thermus sp. PS18]
MKALLARLATAWRNLPQSTKLLLAGLLLVSAVALWYVGFYLPAQVPMEVQPTPGQPQVPSQGAEAPKAIEAPPIPPLAET
PPPGQAAKPSPEASPSQKAPKAGEPVLTPALPIPKTQQEAPLPNPFVPLVVEAPPSPPVPSPAPAPRPTPVPTGAPVRVT
QGTPLPTPSVQTPPRPLPGSQGALPAPKVLTPAFQVETPKAQVETPPLLTPPAGLVEAPLPRAPQTPEGGKTEPSPTTSP
QTPLQALVEEKGIKLAGTLLGPVSVAILETKEGYLVLPVGSLLPGSEAVLRRIESDRVVLALKDESLEIALEKMQAGGGP
EGF

Nucleotide


Download         Length: 972 bp        

>NTDB_id=718104 KQ693_RS00220 WP_267261565.1 42761..43732(+) (pilW) [Thermus sp. PS18]
GTGAAAGCCCTTCTAGCGCGCCTGGCCACGGCTTGGCGCAACCTACCCCAGTCCACCAAGCTCCTCCTGGCGGGCCTTCT
CCTGGTGAGCGCCGTGGCGCTTTGGTATGTGGGTTTCTACCTCCCGGCCCAGGTACCCATGGAGGTGCAACCCACCCCCG
GCCAACCTCAGGTGCCCAGCCAGGGAGCGGAAGCCCCCAAGGCCATAGAAGCTCCACCCATCCCACCCCTCGCCGAAACT
CCTCCGCCGGGTCAAGCGGCGAAGCCTAGCCCCGAGGCTTCTCCTTCCCAGAAAGCCCCTAAAGCAGGCGAGCCCGTCTT
GACCCCCGCCTTGCCCATCCCCAAAACCCAACAAGAGGCCCCGCTTCCAAACCCCTTTGTGCCCCTGGTGGTAGAGGCCC
CACCTTCTCCCCCCGTGCCCTCCCCTGCCCCGGCACCTAGGCCCACTCCCGTACCCACAGGGGCCCCGGTCCGGGTAACC
CAGGGAACACCCCTGCCCACCCCAAGCGTTCAAACTCCACCCCGGCCTCTCCCGGGAAGCCAAGGAGCCCTGCCCGCTCC
CAAGGTGCTTACCCCCGCTTTCCAGGTGGAAACCCCCAAAGCCCAGGTGGAAACCCCACCTCTCCTCACCCCACCCGCTG
GCCTTGTGGAGGCTCCTTTACCCAGGGCACCCCAAACCCCAGAGGGGGGAAAGACTGAACCCTCCCCCACTACTTCCCCC
CAAACCCCCTTGCAAGCCCTGGTGGAGGAGAAAGGCATCAAGCTGGCGGGTACGCTTTTGGGCCCGGTGAGCGTGGCTAT
CTTGGAAACCAAGGAAGGGTACCTGGTATTGCCCGTGGGCAGCCTTCTTCCAGGTAGCGAAGCAGTGCTCCGCCGCATAG
AAAGCGACCGGGTGGTGCTGGCCTTGAAGGATGAAAGCTTGGAGATTGCTTTAGAAAAGATGCAAGCAGGAGGTGGACCT
GAAGGTTTCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

52.484

99.69

0.523