Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NUG20_RS19680 Genome accession   NZ_CP102592
Coordinates   4733109..4734635 (+) Length   508 a.a.
NCBI ID   WP_263396069.1    Uniprot ID   -
Organism   Xanthomonas sp. CFBP 8443     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4728109..4739635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG20_RS19660 (NUG20_19665) speA 4729030..4730919 (-) 1890 WP_263396065.1 arginine decarboxylase -
  NUG20_RS19665 (NUG20_19670) speE 4731229..4732080 (+) 852 WP_263396066.1 polyamine aminopropyltransferase -
  NUG20_RS19670 (NUG20_19675) - 4732311..4732649 (-) 339 WP_263396067.1 P-II family nitrogen regulator -
  NUG20_RS19675 (NUG20_19680) - 4732826..4733095 (+) 270 WP_263396068.1 accessory factor UbiK family protein -
  NUG20_RS19680 (NUG20_19685) comM 4733109..4734635 (+) 1527 WP_263396069.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NUG20_RS19685 (NUG20_19690) - 4734873..4735700 (-) 828 WP_263396070.1 alpha/beta fold hydrolase -
  NUG20_RS19695 (NUG20_19700) ubiA 4736678..4737580 (+) 903 WP_263396071.1 4-hydroxybenzoate octaprenyltransferase -
  NUG20_RS19700 (NUG20_19705) - 4737661..4738185 (-) 525 WP_263396072.1 preprotein translocase subunit SecD -
  NUG20_RS19705 (NUG20_19710) - 4738565..4739290 (-) 726 WP_263396073.1 ComF family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53766.44 Da        Isoelectric Point: 8.5232

>NTDB_id=717982 NUG20_RS19680 WP_263396069.1 4733109..4734635(+) (comM) [Xanthomonas sp. CFBP 8443]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGTYEFLGELALTGELRPVDGVLPAALAAAQAGRILIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPETSEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDGIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVEQARQRQLARAGRANGHLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLDGSDT
IVTAHLTEAISYRQLDRGANAQAAVAAG

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=717982 NUG20_RS19680 WP_263396069.1 4733109..4734635(+) (comM) [Xanthomonas sp. CFBP 8443]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTATCCGG
CGGGCTGCCGGCGACGCAGATCGTCGGCCTGCCCGAGGCTGCGGTGCGCGAATCGCGCGACCGCGTACGCGCCGCCATCC
TGTGCGCGCAGTACGAGTTCCCGGCACGGCGCATCACCGTCAACCTGGCCCCTGCCGACCTGCCCAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTTGCCGCCGCCGGGCAACTGGACCCGCAGGTGCTGGGCACCTACGAGTTTCT
GGGCGAACTGGCGCTGACCGGCGAACTGCGCCCGGTCGACGGCGTGCTGCCGGCGGCGCTGGCCGCCGCGCAGGCCGGGC
GCATCCTGATCGTGCCGGCCGGCAATGGCCCCGAGGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGTACCCTG
CTTGAAGTGTGCGCCCTGTTGAACGGCACCAAGACATTGCCGGCGGCCGAAGCCCTGCCGGCCGCGGCCACGCCGTTCCC
CGACCTGAGCGACGTGCGCGGGCAAGCGCAGGCGCGGCGGGCGCTGGAGATCGCCGCCGCCGGCCATCACCACCTGCTGC
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAAACCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGATCCGGCGCGCTGGCGGCAACGTCCATACCGGTC
TCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACGCATCCGCGCCCGGGCGAGATTTCACTGGCGCACC
ATGGCGTGCTGTTCCTGGACGAGCTGCCCGAATGGAACCGGCACGCGCTGGAGGTGCTGCGCGAGCCGCTGGAATCGGGA
ACGGTCACGGTGTCGCGCGCCGCACGCAGCGCCGAATTCCCAGCGCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACGGCATCCGCCGCTACCGCGCGCGCATCTCCG
GCCCCTTGCTAGACCGCATCGACCTGCACGTGGACGTGCCGCGGCTACCGCCGCAGGCGCTGCGGGCCGATGCCGCACCA
GGCGAAAGCAGCGCCGCCGTGCGTGCGCGGGTGGAGCAGGCACGACAACGCCAGCTGGCGCGCGCTGGCCGCGCCAACGG
CCATCTCGGCCACAGCGAGACCTTGCGCGACTGCCGCCTGCAACCGCGCGATGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGGCTGTCGGCACGCTCGCTGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGACGGAAGCGACACC
ATCGTCACCGCGCACCTGACCGAAGCGATCAGCTATCGGCAACTGGATCGGGGTGCAAATGCCCAAGCTGCCGTTGCAGC
AGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

98.228

0.549
  comM Vibrio campbellii strain DS40M4

54.582

98.819

0.539
  comM Haemophilus influenzae Rd KW20

54.167

99.213

0.537
  comM Glaesserella parasuis strain SC1401

52.976

99.213

0.526
  comM Legionella pneumophila str. Paris

50.794

99.213

0.504
  comM Legionella pneumophila strain ERS1305867

50.794

99.213

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.773

99.803

0.447