Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IL310_RS02450 Genome accession   NZ_CP117409
Coordinates   80483..81076 (+) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75483..86076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS02440 (IL310_02445) - 77561..78271 (+) 711 WP_033899281.1 hypothetical protein -
  IL310_RS02445 (IL310_02450) hexB 78400..80370 (+) 1971 WP_201248692.1 DNA mismatch repair endonuclease MutL Machinery gene
  IL310_RS02450 (IL310_02455) ruvA 80483..81076 (+) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  IL310_RS02455 (IL310_02460) ruvB 81203..82204 (+) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IL310_RS02460 (IL310_02465) - 82506..82751 (+) 246 WP_242481512.1 AAA family ATPase -
  IL310_RS02465 (IL310_02470) - 82988..83152 (+) 165 WP_201248691.1 hypothetical protein -
  IL310_RS02470 (IL310_02475) - 83296..83733 (+) 438 WP_003131986.1 low molecular weight protein-tyrosine-phosphatase -
  IL310_RS02475 (IL310_02480) - 83834..84199 (+) 366 WP_003131985.1 MerR family transcriptional regulator -
  IL310_RS02480 (IL310_02485) glnA 84261..85601 (+) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  IL310_RS02485 (IL310_02490) - 85660..85860 (-) 201 WP_003131983.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=717982 IL310_RS02450 WP_003131995.1 80483..81076(+) (ruvA) [Lactococcus lactis strain LB7]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=717982 IL310_RS02450 WP_003131995.1 80483..81076(+) (ruvA) [Lactococcus lactis strain LB7]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462