Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   MOP79_RS02925 Genome accession   NZ_CP102583
Coordinates   561843..563486 (+) Length   547 a.a.
NCBI ID   WP_075320261.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 556843..568486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS02890 rimP 556856..557335 (-) 480 WP_001810863.1 ribosome maturation factor RimP -
  MOP79_RS02895 trmB 557461..558096 (-) 636 WP_001266083.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  MOP79_RS02900 ccrZ 558093..558887 (-) 795 WP_000363002.1 cell cycle regulator CcrZ -
  MOP79_RS02905 - 559048..559659 (-) 612 WP_000394036.1 CPBP family intramembrane glutamic endopeptidase -
  MOP79_RS02910 blpZ 559810..560043 (-) 234 WP_000276498.1 immunity protein BlpZ -
  MOP79_RS02915 - 560085..560774 (-) 690 WP_000760523.1 CPBP family intramembrane glutamic endopeptidase -
  MOP79_RS02920 - 560806..561039 (-) 234 WP_001093273.1 hypothetical protein -
  MOP79_RS10585 comA/nlmT 561329..561916 (+) 588 WP_001856103.1 cysteine peptidase family C39 domain-containing protein Regulator
  MOP79_RS02925 comA/nlmT 561843..563486 (+) 1644 WP_075320261.1 peptide cleavage/export ABC transporter Regulator
  MOP79_RS02930 - 563497..564858 (+) 1362 Protein_581 bacteriocin secretion accessory protein -
  MOP79_RS02935 blpC 564915..565070 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  MOP79_RS02940 - 565112..566452 (-) 1341 WP_001017622.1 sensor histidine kinase -
  MOP79_RS02945 comE/blpR 566466..567203 (-) 738 WP_001219139.1 response regulator transcription factor Regulator
  MOP79_RS02950 - 567208..567546 (-) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  MOP79_RS02955 - 567822..568151 (+) 330 WP_000132569.1 hypothetical protein -

Sequence

Protein


Download         Length: 547 a.a.        Molecular weight: 61672.66 Da        Isoelectric Point: 6.7869

>NTDB_id=717845 MOP79_RS02925 WP_075320261.1 561843..563486(+) (comA/nlmT) [Streptococcus pneumoniae strain D39Mega17545]
MVLSSLLVTIINIGGSYYLQGILDEYIPNQMKSTLGIISVGLVITYILQQVMSFSRDYLLTVLSQRLSIDVILSYIRHIF
ELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDVSILILVGGVLLAQNPNLFLLSLLSIPIYMFIIFSFMKPFE
KMNHDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQNIDSEFVDYLEKSFKLSKYSILQTSLKQGTKLVLNILILWFG
AQLVMSSKISIGQLITFNTLFSYFTTPMENIINLQTKLQSAKVANNRLNEVYLVESEFQVQENPVHSHFLMGDIEFDDLS
YKYGFGRDTLTDINLTIKQGDKVSLVGVSGSGKTTLAKMIVNFFKPYKGHISINHQDIKNIDKKVLRRHINYLPQQAYIF
NGSILENLTLGGNHMISQEDILKAYELAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKSPVLILDEATSG
LDVLTEKKVIDNLISLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 1644 bp        

>NTDB_id=717845 MOP79_RS02925 WP_075320261.1 561843..563486(+) (comA/nlmT) [Streptococcus pneumoniae strain D39Mega17545]
ATTGTTCTCTCAAGCTTATTGGTCACTATTATCAATATAGGTGGTTCTTACTATCTCCAAGGAATCTTGGATGAGTACAT
TCCAAATCAGATGAAATCAACTTTAGGAATCATCTCAGTTGGTCTGGTTATCACCTATATCCTCCAACAAGTCATGAGCT
TCTCCAGAGATTATCTCCTAACCGTTCTGAGCCAGAGATTAAGCATTGATGTGATTTTATCCTATATTCGCCATATTTTT
GAACTTCCCATGTCTTTCTTTGCGACACGTCGTACAGGAGAAATCATTTCACGGTTCACAGATGCTAACTCTATTATAGA
TGCCTTGGCTTCTACCATTCTTTCTCTTTTTCTGGATGTTTCTATTCTGATTCTTGTAGGGGGAGTCTTGCTGGCACAAA
ACCCTAATCTCTTCCTCCTTTCTCTTCTTTCCATTCCTATATACATGTTCATCATCTTTTCTTTTATGAAACCTTTTGAA
AAAATGAACCATGATGTCATGCAAAGTAATTCTATGGTTAGCTCTGCCATTATCGAAGATATCAACGGGATTGAAACTAT
AAAGTCGCTCACGAGTGAAGAAAATCGCTATCAAAATATAGACAGCGAATTTGTAGATTATTTGGAAAAATCCTTTAAGC
TCAGTAAATATTCTATTTTACAAACGAGTTTAAAGCAGGGAACAAAATTAGTTCTGAATATCCTTATCCTATGGTTTGGC
GCTCAATTAGTCATGTCGAGTAAAATTTCTATCGGTCAGCTGATTACCTTTAACACACTTTTTTCTTACTTTACAACTCC
TATGGAAAATATTATCAACCTCCAAACCAAACTCCAATCTGCGAAGGTCGCTAATAACCGTTTGAACGAAGTCTATCTAG
TCGAATCTGAATTTCAAGTTCAAGAAAACCCTGTTCATTCACATTTTTTGATGGGCGATATTGAATTTGATGACCTTTCT
TATAAGTATGGTTTTGGACGAGATACCTTAACAGATATTAATCTCACGATTAAACAAGGAGATAAGGTTAGCCTAGTTGG
AGTTAGTGGTTCTGGTAAAACAACTTTAGCCAAAATGATTGTCAATTTCTTTAAACCCTACAAAGGGCATATTTCCATCA
ATCATCAGGATATTAAAAACATTGATAAAAAAGTCTTGCGCCGTCATATTAATTACCTACCCCAACAAGCCTATATCTTT
AATGGCTCTATTTTGGAAAACTTAACCTTGGGCGGTAATCATATGATTAGCCAAGAAGATATTCTAAAAGCTTATGAATT
AGCTGAAATTCGTCAAGACATTGAAAGAATGCCTATGGGCTATCAAACTCAGCTCTCTGATGGAGCTGGTCTATCAGGAG
GACAAAAGCAACGAATCGCTCTCGCTCGTGCTCTTTTAACTAAATCTCCTGTTTTAATACTAGACGAAGCTACTAGCGGT
CTTGATGTCTTGACTGAGAAAAAGGTTATAGATAATCTTATATCCCTAACTGATAAAACCATTCTCTTTGTAGCCCATCG
TCTCAGTATAGCCGAACGAACTAACCGTGTCATTGTTCTTGACCAGGGGAAAATCATTGAAGTTGGTAGTCACCAAGAGT
TAATGCAGGCGCAAGGCTTCTACCATCATCTATTCAATAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(2-268)

ABC transporter (ABC_tran)

(330-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.527

99.817

0.724
  comA Streptococcus pneumoniae Rx1

67.459

100

0.675
  comA Streptococcus pneumoniae D39

67.459

100

0.675
  comA Streptococcus pneumoniae R6

67.459

100

0.675
  comA Streptococcus mitis NCTC 12261

67.459

100

0.675
  comA Streptococcus pneumoniae TIGR4

67.093

100

0.671
  comA Streptococcus gordonii str. Challis substr. CH1

66.788

100

0.669
  comA Streptococcus mitis SK321

66.91

100

0.669