Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NQE15_RS00240 Genome accession   NZ_CP102486
Coordinates   55576..57069 (-) Length   497 a.a.
NCBI ID   WP_265945483.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 50576..62069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS00225 - 53422..53916 (-) 495 WP_265945477.1 hypothetical protein -
  NQE15_RS00230 - 54006..54398 (+) 393 WP_265945479.1 rhodanese-like domain-containing protein -
  NQE15_RS00235 - 54378..55583 (-) 1206 WP_265945481.1 multidrug effflux MFS transporter -
  NQE15_RS00240 comM 55576..57069 (-) 1494 WP_265945483.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NQE15_RS00245 - 57076..57318 (-) 243 WP_265945484.1 accessory factor UbiK family protein -
  NQE15_RS00250 - 57563..58384 (+) 822 WP_265945486.1 TorF family putative porin -
  NQE15_RS00255 glnK 58468..58806 (+) 339 WP_265945489.1 P-II family nitrogen regulator -
  NQE15_RS00260 - 58817..60283 (+) 1467 WP_265945491.1 ammonium transporter -
  NQE15_RS00265 - 60387..61664 (-) 1278 WP_265945493.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52151.83 Da        Isoelectric Point: 8.5026

>NTDB_id=717242 NQE15_RS00240 WP_265945483.1 55576..57069(-) (comM) [Dechloromonas sp. A34]
MALAIAHSRGLDGLNAPPVLVEVHLASGLPSFTLVGLPDTEVKEARDRVRAAIVNSGFEFPSKRITVNLAPADLPKESGR
FDLPIALGILAASNQTPTKALADYEFAGELSLSGELRPVRGALAMALQTAGNGKAFILPEASAREAALTGSGEILGAKSL
LEVCAHLAGRSTLAPATAVASPETLGFPDLAEVRGQAQAKRALEIAAAGSHSLLMVGPPGSGKSMLAARLPGLMPALDGD
AAKSSAAVLSLVGQFRPECFGIRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGVLFLDELTEFDRKVLETLREPLETG
RIHIARAARQAEFPAEFQLVAAMNPCSCGFMGHGNGKCRCTPDQIARYRGKLSGPFLDRIDLLIEVPALPADALAGKPEG
EASATVRARVEIAQGRQRARQQKPNARLSAAEVDACCTPDEAGSKLLKQATSQLDLSARAWHRILKVARTIADLAGSDSV
RAAHVGEAIQYRRFARG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=717242 NQE15_RS00240 WP_265945483.1 55576..57069(-) (comM) [Dechloromonas sp. A34]
ATGGCGCTGGCCATCGCTCACAGCCGCGGGCTGGATGGCCTGAACGCGCCGCCGGTCCTGGTCGAAGTCCATCTCGCCAG
CGGCCTGCCCAGCTTCACCCTGGTCGGCCTGCCCGACACCGAAGTCAAGGAAGCGCGTGACCGGGTGCGGGCGGCGATTG
TCAATTCCGGTTTCGAATTTCCCAGCAAGCGCATTACGGTCAACCTGGCCCCAGCCGATCTGCCCAAGGAATCCGGTCGT
TTCGACCTGCCGATCGCCCTCGGCATTCTCGCCGCCAGCAACCAGACCCCCACCAAGGCCCTGGCCGATTACGAATTTGC
CGGCGAACTCTCGCTTTCCGGCGAGTTGCGGCCGGTCCGCGGTGCGCTCGCCATGGCGCTGCAAACGGCGGGCAACGGCA
AGGCGTTCATCCTGCCCGAAGCCAGCGCCCGGGAAGCCGCTCTGACTGGTTCCGGCGAAATCCTTGGCGCCAAATCACTG
CTTGAGGTCTGCGCCCATCTGGCGGGCCGGAGCACACTAGCGCCGGCAACCGCAGTCGCCAGCCCAGAAACCCTGGGCTT
CCCGGACCTCGCCGAAGTACGCGGGCAAGCTCAAGCCAAACGGGCACTGGAGATTGCCGCCGCCGGATCTCACTCGCTCC
TCATGGTCGGCCCACCCGGTTCGGGCAAATCGATGCTTGCCGCCCGCCTGCCCGGCCTGATGCCAGCACTCGACGGTGAC
GCCGCCAAGTCTTCGGCTGCGGTCCTCTCGCTGGTCGGCCAGTTCCGACCGGAATGTTTCGGAATTCGTCCCTATCGCCA
GCCACACCATACTGCCTCAGCGGTAGCCCTGGTCGGCGGCGGCAACCCGCCGCGACCAGGCGAGATCAGTCTGGCCCACC
AAGGGGTGCTTTTTCTCGATGAGCTGACCGAGTTCGACCGCAAGGTGCTCGAAACCCTGCGCGAACCGCTTGAGACCGGG
CGGATCCATATCGCCCGCGCCGCCCGCCAGGCTGAATTTCCTGCCGAGTTTCAACTGGTTGCCGCGATGAATCCCTGCAG
TTGTGGCTTCATGGGTCACGGGAACGGCAAATGCCGGTGCACGCCGGATCAGATTGCCCGATATCGCGGCAAGCTGTCAG
GGCCTTTCCTCGACCGCATTGACCTACTGATCGAAGTCCCGGCCTTACCTGCCGATGCCTTGGCCGGCAAGCCGGAGGGC
GAAGCCTCGGCCACTGTCCGCGCCCGGGTGGAAATCGCCCAGGGCCGGCAACGGGCCCGTCAGCAAAAACCCAATGCCCG
GCTGAGTGCTGCCGAAGTCGATGCCTGTTGCACCCCGGACGAAGCCGGCAGCAAACTGCTCAAACAGGCGACCAGCCAGC
TCGATCTCTCGGCCCGAGCCTGGCACCGCATCCTCAAAGTTGCCCGCACCATCGCCGACTTAGCCGGCAGCGACAGCGTT
CGCGCCGCGCACGTCGGCGAAGCCATCCAGTATCGCCGGTTCGCCCGTGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.507

100

0.537
  comM Vibrio campbellii strain DS40M4

53.307

100

0.535
  comM Haemophilus influenzae Rd KW20

50.397

100

0.511
  comM Glaesserella parasuis strain SC1401

50

100

0.507
  comM Legionella pneumophila str. Paris

50

100

0.507
  comM Legionella pneumophila strain ERS1305867

50

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.455