Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NUT31_RS15760 Genome accession   NZ_CP102454
Coordinates   3491768..3493282 (+) Length   504 a.a.
NCBI ID   WP_268014029.1    Uniprot ID   -
Organism   Aeromonas sp. BC14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3486768..3498282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUT31_RS15745 (NUT31_15740) - 3488533..3489477 (-) 945 WP_268014027.1 branched-chain amino acid transaminase -
  NUT31_RS15750 (NUT31_15745) ilvM 3489490..3489741 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  NUT31_RS15755 (NUT31_15750) ilvG 3489738..3491384 (-) 1647 WP_268014028.1 acetolactate synthase 2 catalytic subunit -
  NUT31_RS15760 (NUT31_15755) comM 3491768..3493282 (+) 1515 WP_268014029.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NUT31_RS15765 (NUT31_15760) - 3493403..3494317 (+) 915 WP_029302342.1 acyltransferase -
  NUT31_RS15770 (NUT31_15765) - 3494311..3495267 (+) 957 WP_194758911.1 acyltransferase -
  NUT31_RS15775 (NUT31_15770) - 3495213..3495698 (-) 486 WP_268014030.1 DUF523 domain-containing protein -
  NUT31_RS15780 (NUT31_15775) - 3495695..3496345 (-) 651 WP_043164002.1 DNA mismatch repair protein MutT -
  NUT31_RS15785 (NUT31_15780) - 3496421..3497056 (+) 636 WP_194758913.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54707.69 Da        Isoelectric Point: 7.9889

>NTDB_id=717131 NUT31_RS15760 WP_268014029.1 3491768..3493282(+) (comM) [Aeromonas sp. BC14]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAKVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLAARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=717131 NUT31_RS15760 WP_268014029.1 3491768..3493282(+) (comM) [Aeromonas sp. BC14]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTTGCGGCCCCGCAAGTGACGGTGGAGGTACACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTCCCCAAGGAGGGAGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGTC
GCACCCTGCTGGTACCGCGAGAAAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCAAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCTCAAGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCACCGCTCAGCGAACAA
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGCGGTGGCAGTCACCCGCGGCCCGGTGAAATTTCGTTGGCCC
ACAATGGGGTGCTGTTTCTGGATGAGTTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGCGGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCACCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGACAGGCCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGTTACCGGGCCATGGACCGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464