Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ZBT109_RS01605 Genome accession   NZ_AP018933
Coordinates   343781..344410 (+) Length   209 a.a.
NCBI ID   WP_027704539.1    Uniprot ID   -
Organism   Zymobacter palmae strain IAM14233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 338781..349410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZBT109_RS01595 (ZBT109_0339) rplQ 339547..339930 (+) 384 WP_027704537.1 50S ribosomal protein L17 -
  ZBT109_RS01600 (ZBT109_0340) uvrA 340700..343540 (-) 2841 WP_027704538.1 excinuclease ABC subunit UvrA -
  ZBT109_RS01605 (ZBT109_0341) ssb 343781..344410 (+) 630 WP_027704539.1 single-stranded DNA-binding protein Machinery gene
  ZBT109_RS01610 (ZBT109_0342) - 344758..345237 (+) 480 WP_156934025.1 hypothetical protein -
  ZBT109_RS01615 (ZBT109_0343) - 345364..345870 (+) 507 WP_027704541.1 hypothetical protein -
  ZBT109_RS01620 (ZBT109_0344) - 346027..346911 (+) 885 WP_145984462.1 sugar nucleotide-binding protein -
  ZBT109_RS01625 (ZBT109_0345) - 347107..347817 (+) 711 WP_027704543.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22971.87 Da        Isoelectric Point: 5.1943

>NTDB_id=71703 ZBT109_RS01605 WP_027704539.1 343781..344410(+) (ssb) [Zymobacter palmae strain IAM14233]
MARGVNKVILIGNVGQDPDVRFLPSGNPVCNLRIATSDSWTDRQTGQRQERTEWHSVVLFNKLAEIAQQYVHKGSRLYIE
GRLQTRKWQGQDGQDRYSTEIVANDMQMLDSRGNAGGNDYPNNGGQQGGYQPQGGMNNGGQQQGNPYGQPQQQQRSAAPQ
QPQQPAQQQSQSFGGAPQQQGTPYGQPQQQNNGAPAPGGFDDFDDEIPF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=71703 ZBT109_RS01605 WP_027704539.1 343781..344410(+) (ssb) [Zymobacter palmae strain IAM14233]
ATGGCCCGTGGTGTAAACAAGGTCATCCTGATAGGCAACGTGGGTCAGGATCCGGACGTACGGTTCCTGCCCTCAGGCAA
CCCTGTGTGCAACCTGCGTATCGCTACCAGCGATAGCTGGACCGATCGTCAGACTGGACAGCGTCAGGAACGCACGGAAT
GGCATTCCGTTGTGCTGTTCAACAAGCTGGCGGAAATCGCGCAGCAGTACGTTCACAAAGGCTCCCGTCTTTATATCGAA
GGTCGCCTGCAGACGCGTAAATGGCAAGGCCAAGACGGTCAGGATCGCTATTCTACCGAGATCGTTGCCAACGATATGCA
AATGCTGGATTCTCGTGGCAATGCGGGTGGCAATGACTATCCGAATAATGGGGGTCAGCAAGGCGGCTATCAACCCCAAG
GCGGCATGAATAACGGCGGCCAGCAGCAGGGCAATCCTTATGGTCAGCCTCAGCAGCAACAGCGTAGTGCCGCGCCGCAG
CAACCCCAGCAGCCTGCGCAGCAGCAGTCTCAGTCGTTTGGCGGTGCTCCGCAGCAGCAGGGTACCCCTTATGGTCAGCC
CCAGCAGCAGAACAATGGTGCGCCAGCGCCGGGCGGCTTCGACGATTTCGATGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.887

100

0.526
  ssb Glaesserella parasuis strain SC1401

42.925

100

0.435
  ssb Neisseria meningitidis MC58

44.175

98.565

0.435
  ssb Neisseria gonorrhoeae MS11

43.204

98.565

0.426

Multiple sequence alignment