Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NRF19_RS11090 Genome accession   NZ_CP102377
Coordinates   1890175..1891695 (-) Length   506 a.a.
NCBI ID   WP_327061152.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain M17     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1885175..1896695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF19_RS11080 (NRF19_11050) hdfR 1888871..1889692 (-) 822 WP_327061151.1 HTH-type transcriptional regulator HdfR -
  NRF19_RS11085 (NRF19_11055) - 1889811..1890149 (+) 339 WP_039031246.1 DUF413 domain-containing protein -
  NRF19_RS11090 (NRF19_11060) comM 1890175..1891695 (-) 1521 WP_327061152.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NRF19_RS11095 (NRF19_11065) ilvL 1892038..1892136 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NRF19_RS11100 (NRF19_11070) ilvG 1892276..1893922 (+) 1647 WP_220435006.1 acetolactate synthase 2 catalytic subunit -
  NRF19_RS11105 (NRF19_11075) ilvM 1893919..1894188 (+) 270 WP_103177473.1 acetolactate synthase 2 small subunit -
  NRF19_RS11110 (NRF19_11080) ilvE 1894206..1895135 (+) 930 WP_103825309.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55118.43 Da        Isoelectric Point: 7.3695

>NTDB_id=716632 NRF19_RS11090 WP_327061152.1 1890175..1891695(-) (comM) [Leclercia adecarboxylata strain M17]
MSLSVVYTRAALGVEAPLICVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLVASEQLSSTRISAYEFVGELALTGALRGVPGAISGALAAIRAGREIIVARDNAAEVSLVEEKGCLVAEHL
QEVCAFLEGRHELAAPVGVPFVAEHNECDISDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLNTLLPPLSNH
EALESAAIVSLVSATSMYKQWRQRPFRAPHHSASLVAMVGGGAIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQAHKTG
ESSLTVRNRVIAAQERQLARQKKRNAHLDNTEIRTFCRLAADDALWLEETLTHFGLSVRAWQRLLKVARTIADLEECENI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=716632 NRF19_RS11090 WP_327061152.1 1890175..1891695(-) (comM) [Leclercia adecarboxylata strain M17]
ATGTCATTGTCGGTTGTCTATACCCGCGCTGCATTAGGCGTTGAAGCACCGCTTATTTGCGTCGAAGTTCATCTCAGTAA
TGGCCTGCCTGGCCTGACGCTGGTCGGCCTGCCCGAAACCACCGTCAAGGAGGCCAGAGACCGGGTACGCAGCGCGATCA
TCAATAGTGGTTATACCTTCCCGGCCAAAAAGATCACTATCAATCTGGCCCCAGCCGATCTCCCCAAGGAAGGCGGACGA
TACGATTTACCTATCGCCATCGCGCTTCTCGTCGCCTCTGAGCAGCTCTCCTCCACCCGGATAAGCGCATATGAGTTTGT
GGGTGAGCTGGCGCTTACAGGCGCATTAAGAGGGGTTCCTGGCGCGATATCTGGCGCTCTGGCGGCTATACGCGCCGGTA
GAGAGATTATCGTCGCCAGAGATAATGCTGCTGAAGTCAGCCTTGTTGAAGAAAAAGGCTGCCTGGTTGCTGAACATCTG
CAGGAGGTATGCGCTTTTCTTGAGGGACGTCATGAGCTGGCCGCGCCCGTTGGGGTGCCGTTTGTTGCCGAACATAACGA
GTGTGACATCAGCGATATCATCGGTCAGGAACAGGGTAAAAGGGCGCTGGAGATCACCGCAGCCGGTGCGCATAACCTGT
TGCTCATAGGCCCACCCGGCACCGGCAAAACCATGCTCGCGAGTCGGCTCAACACTCTGCTGCCGCCACTCAGCAATCAT
GAGGCGCTGGAAAGCGCGGCTATCGTAAGCCTGGTCAGCGCCACATCAATGTATAAACAATGGCGTCAGCGCCCTTTCCG
GGCCCCGCATCATAGTGCCTCGCTGGTAGCCATGGTGGGTGGAGGCGCAATCCCTGCGCCGGGAGAGATCTCACTGGCAC
ATAACGGCATCCTGTTCCTGGACGAATTGCCCGAGTTTGAGCGTCGCGTACTGGATGCCTTACGCGAGCCCATCGAATCC
GGACAAATTAATATCTCCCGCACCCGCGCCAAGATCAGTTATCCGGCACGCTTCCAGCTTATCGCCGCCATGAACCCCAG
CCCAACGGGGCACTATCAAGGCAATCATAATCGCTGCTCGCCCGAGCAGACGCTGCGCTATCTGGGTCGCTTGTCCGGGC
CATTCCTCGACCGCTTCGATTTATCGCTCGAGATCCCCCTACCGCCGCCAGGCTTGCTAAGCCAGGCGCATAAAACGGGG
GAATCAAGCCTCACCGTGCGAAACCGAGTGATTGCCGCGCAGGAGAGGCAGCTGGCGAGGCAGAAGAAACGTAACGCGCA
TCTGGATAACACTGAGATCCGCACTTTTTGCCGGCTAGCGGCAGACGACGCGCTGTGGCTGGAGGAGACACTTACCCATT
TTGGTCTGTCAGTACGTGCGTGGCAGCGGTTGTTAAAAGTTGCCCGTACTATTGCCGATCTGGAGGAGTGTGAAAATATT
GAACGCAGGCATCTACAGGAAGCGCTGAGCTATCGCGCTATTGACCGCCTGCTGTTACACCTGCAAAAGATGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.687

100

0.603
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443