Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NRF19_RS08990 Genome accession   NZ_CP102377
Coordinates   1433977..1434501 (-) Length   174 a.a.
NCBI ID   WP_114316148.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain M17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1428977..1439501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF19_RS08970 (NRF19_08940) soxS 1429410..1429736 (+) 327 WP_103177869.1 superoxide response transcriptional regulator SoxS -
  NRF19_RS08975 (NRF19_08945) - 1429733..1431319 (-) 1587 WP_327061018.1 EAL domain-containing protein -
  NRF19_RS08980 (NRF19_08950) - 1431659..1433062 (-) 1404 WP_419182090.1 diguanylate cyclase -
  NRF19_RS08985 (NRF19_08955) - 1433610..1433891 (+) 282 WP_103825404.1 YjcB family protein -
  NRF19_RS08990 (NRF19_08960) ssb 1433977..1434501 (-) 525 WP_114316148.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NRF19_RS08995 (NRF19_08965) uvrA 1434753..1437578 (+) 2826 WP_103825402.1 excinuclease ABC subunit UvrA -
  NRF19_RS09000 (NRF19_08970) - 1437579..1437932 (-) 354 WP_103825401.1 MmcQ/YjbR family DNA-binding protein -
  NRF19_RS09005 (NRF19_08975) - 1437935..1438351 (-) 417 WP_327061020.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=716627 NRF19_RS08990 WP_114316148.1 1433977..1434501(-) (ssb) [Leclercia adecarboxylata strain M17]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQPSAPAQ
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=716627 NRF19_RS08990 WP_114316148.1 1433977..1434501(-) (ssb) [Leclercia adecarboxylata strain M17]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACCTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTCGTGCTGTTTGGCAAACTGGCTGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGCGGTCGTCAGGGCGGCGGTGCGCCGGCAGGTGGTGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCCGTCTGCGCCAGCGCAG
TCCAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.799
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374