Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NRZ32_RS18200 Genome accession   NZ_CP102368
Coordinates   3979904..3981418 (+) Length   504 a.a.
NCBI ID   WP_268037730.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3974904..3986418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ32_RS18185 (NRZ32_18185) - 3976668..3977612 (-) 945 WP_268037727.1 branched-chain amino acid transaminase -
  NRZ32_RS18190 (NRZ32_18190) ilvM 3977625..3977876 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  NRZ32_RS18195 (NRZ32_18195) ilvG 3977873..3979519 (-) 1647 WP_268037729.1 acetolactate synthase 2 catalytic subunit -
  NRZ32_RS18200 (NRZ32_18200) comM 3979904..3981418 (+) 1515 WP_268037730.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NRZ32_RS18205 (NRZ32_18205) - 3981534..3982448 (+) 915 WP_268037731.1 acyltransferase -
  NRZ32_RS18210 (NRZ32_18210) - 3982442..3983395 (+) 954 WP_268037732.1 acyltransferase -
  NRZ32_RS18215 (NRZ32_18215) - 3983341..3983826 (-) 486 WP_017764912.1 DUF523 domain-containing protein -
  NRZ32_RS18220 (NRZ32_18220) - 3983927..3984577 (-) 651 WP_268037733.1 NUDIX hydrolase -
  NRZ32_RS18225 (NRZ32_18225) - 3984653..3985288 (+) 636 WP_005306831.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54714.60 Da        Isoelectric Point: 7.3080

>NTDB_id=716566 NRZ32_RS18200 WP_268037730.1 3979904..3981418(+) (comM) [Aeromonas dhakensis strain BC18]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDHQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=716566 NRZ32_RS18200 WP_268037730.1 3979904..3981418(+) (comM) [Aeromonas dhakensis strain BC18]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAATATGGTGGGACTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTCCCCTCCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATCCCAGCAAAATATCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTAGCGGGCCAGTACGAACTGCCACTGCCGGATCACCAGACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAATCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGTCTCACCCCTCGGGCCGGTCACTGGCACCACAGGCCCTATCG
TACGCCCCACCACAGCGCCTCGGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAAGTACCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCCGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAGCGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATTT
GCTTGATAGCCGCGAAATAGAAGAAATTTGCCGCTTATCGCCGCAAGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.5

100

0.625
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466