Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NQ186_RS25420 | Genome accession | NZ_CP102358 |
| Coordinates | 5728317..5729189 (+) | Length | 290 a.a. |
| NCBI ID | WP_093434872.1 | Uniprot ID | - |
| Organism | Pseudomonas zeae strain BIM B-582 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5723317..5734189
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ186_RS25395 (NQ186_25395) | - | 5723501..5723797 (+) | 297 | WP_093434887.1 | DUF2845 domain-containing protein | - |
| NQ186_RS25400 (NQ186_25400) | - | 5724083..5724439 (-) | 357 | WP_077574577.1 | BON domain-containing protein | - |
| NQ186_RS25405 (NQ186_25405) | - | 5724737..5725168 (-) | 432 | WP_038369043.1 | pilin | - |
| NQ186_RS25410 (NQ186_25410) | pilB | 5725395..5727095 (+) | 1701 | WP_257356139.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NQ186_RS25415 (NQ186_25415) | pilC | 5727098..5728315 (+) | 1218 | WP_093434875.1 | type II secretion system F family protein | Machinery gene |
| NQ186_RS25420 (NQ186_25420) | pilD | 5728317..5729189 (+) | 873 | WP_093434872.1 | A24 family peptidase | Machinery gene |
| NQ186_RS25425 (NQ186_25425) | coaE | 5729186..5729809 (+) | 624 | WP_257356140.1 | dephospho-CoA kinase | - |
| NQ186_RS25430 (NQ186_25430) | yacG | 5729806..5730006 (+) | 201 | WP_095048684.1 | DNA gyrase inhibitor YacG | - |
| NQ186_RS25435 (NQ186_25435) | - | 5730013..5730228 (-) | 216 | WP_007959584.1 | hypothetical protein | - |
| NQ186_RS25440 (NQ186_25440) | - | 5730294..5730983 (-) | 690 | WP_099757210.1 | energy-coupling factor ABC transporter permease | - |
| NQ186_RS25445 (NQ186_25445) | - | 5730980..5731447 (-) | 468 | WP_257356141.1 | FAD/FMN-containing dehydrogenase | - |
| NQ186_RS25450 (NQ186_25450) | - | 5731578..5732204 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| NQ186_RS25455 (NQ186_25455) | - | 5732201..5732728 (+) | 528 | WP_099757212.1 | MOSC domain-containing protein | - |
| NQ186_RS25460 (NQ186_25460) | - | 5732780..5732953 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32239.53 Da Isoelectric Point: 7.7032
>NTDB_id=716408 NQ186_RS25420 WP_093434872.1 5728317..5729189(+) (pilD) [Pseudomonas zeae strain BIM B-582]
MPIDELFAMYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPIYNLMLPHSECPHCAHRIR
PWENVPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK
MPIDELFAMYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPIYNLMLPHSECPHCAHRIR
PWENVPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=716408 NQ186_RS25420 WP_093434872.1 5728317..5729189(+) (pilD) [Pseudomonas zeae strain BIM B-582]
ATGCCTATCGACGAACTGTTTGCCATGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCATCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCATTGCGCCCACCGGATTCGC
CCGTGGGAGAACGTTCCCCTGCTCAGTTATCTATGGCTGCGCGGGCGCTGTTCAGCGTGCTCAGCTCCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTTTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCCGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTAACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGTCATGGTGATT
TCAAACTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGCGAGCAAAAAACCTCGACACCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCATGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCATCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCATTGCGCCCACCGGATTCGC
CCGTGGGAGAACGTTCCCCTGCTCAGTTATCTATGGCTGCGCGGGCGCTGTTCAGCGTGCTCAGCTCCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTTTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCCGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTAACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGTCATGGTGATT
TCAAACTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGCGAGCAAAAAACCTCGACACCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.448 |
100 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
49.442 |
92.759 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
49.442 |
92.759 |
0.459 |
| pilD | Neisseria gonorrhoeae MS11 |
47.037 |
93.103 |
0.438 |