Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NQ186_RS25525 Genome accession   NZ_CP102358
Coordinates   5743476..5745065 (+) Length   529 a.a.
NCBI ID   WP_093434840.1    Uniprot ID   -
Organism   Pseudomonas zeae strain BIM B-582     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5738476..5750065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ186_RS25505 (NQ186_25505) pgeF 5740269..5740991 (-) 723 WP_099757214.1 peptidoglycan editing factor PgeF -
  NQ186_RS25510 (NQ186_25510) rluD 5740988..5741950 (-) 963 WP_034153865.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NQ186_RS25515 (NQ186_25515) - 5742102..5743118 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  NQ186_RS25520 (NQ186_25520) - 5743244..5743486 (+) 243 WP_093434843.1 PP0621 family protein -
  NQ186_RS25525 (NQ186_25525) pilS 5743476..5745065 (+) 1590 WP_093434840.1 PAS domain-containing sensor histidine kinase Regulator
  NQ186_RS25530 (NQ186_25530) pilR 5745062..5746408 (+) 1347 WP_099757217.1 sigma-54 dependent transcriptional regulator Regulator
  NQ186_RS25535 (NQ186_25535) thiO 5746540..5747640 (-) 1101 WP_257356143.1 glycine oxidase ThiO -
  NQ186_RS25540 (NQ186_25540) - 5747698..5748099 (-) 402 WP_093434831.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58541.16 Da        Isoelectric Point: 6.7811

>NTDB_id=716409 NQ186_RS25525 WP_093434840.1 5743476..5745065(+) (pilS) [Pseudomonas zeae strain BIM B-582]
MIAEATHADSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFNHALSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEARRVQLANHSAKTLLAQSHLQGHLID
DYSTALVDRLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPHQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVVESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLSLFSDPDSQLAVLEVQDNGPGVPLDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=716409 NQ186_RS25525 WP_093434840.1 5743476..5745065(+) (pilS) [Pseudomonas zeae strain BIM B-582]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGCTTGAGTAT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
GTGGCAGTTGGCTGTATCTGATCCTCAACATTCTGTTGGTAGTGTTCCTTGAGAACACCCGACGGCCAGCGCAGCTGTTC
AGTCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTTTGTTCTTTGCTGCGGGCGGCGTCGGCAGTGCGCTGGGCAATTT
GCTGATTGTCTCTGTGGCGATCAGCAACACCCTGCTACGGCGGCGCATCGGGCTATTGATCGCCGCCATCGGTGCGCTGG
GCATCGTCGGCTCGAGCTTCCTGCTCGGCTTCAACCATGCCCTTAGCGCCAATGAATACTTGCAGGCCGGCACCCTTGGT
GCGCTGTGCTTTGCCGCGTCGTTGCTGGTGCAGGGACTGATCCGCCGCCTCGAAGTCAGCGAAACCCTTGCCGAGCAACG
TGCCAGTGAAGTGGTCAGCCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGGCGCGGCGAGTGCAACTGGCCAATCACAGCGCGAAAACCCTGCTTGCGCAGTCGCACCTCCAGGGGCATTTGATCGAT
GACTATTCCACGGCGCTGGTCGATCGCCTGCAACTGTGGCTGAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAACCGAGCTTCATTGCCCTCGAACAAAGCCCCCACCAACAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAAGCCCAGCAACTTAAGCTCGCCGCACTCGGGCGCTTGACCGCCGGCATCGCCCACGAG
ATTCGCAATCCGTTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGCCTGGATCTCAAGCCATGGCTGGAAAACTTCGTTGTCGAGAGTCGTGAACAGGCCAGCGAACGC
CAGCAGATTCACCTGCGGATCAATTCGGGAGACTTCACCACGCTGATGGACCCGAACCAGCTCACGCAAATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCCCTGCTGCATGATCAGGCCGAAGTCTGGCTGTCGTTGTTCAGTGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTCCCGCTCGATCAACAGACGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597