Detailed information NTG0716410

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NQ186_RS25530
• Genome accession: NZ_CP102358
• Coordinates: 5745062..5746408 (+)
• Length: 448 a.a.
• NCBI ID: WP_099757217.1
• Uniprot ID: -
• Organism: Pseudomonas zeae strain BIM B-582
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5740062..5751408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ186_RS25505 (NQ186_25505)	pgeF	5740269..5740991 (-)	723	WP_099757214.1	peptidoglycan editing factor PgeF	-
NQ186_RS25510 (NQ186_25510)	rluD	5740988..5741950 (-)	963	WP_034153865.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
NQ186_RS25515 (NQ186_25515)	-	5742102..5743118 (+)	1017	WP_093434846.1	outer membrane protein assembly factor BamD	-
NQ186_RS25520 (NQ186_25520)	-	5743244..5743486 (+)	243	WP_093434843.1	PP0621 family protein	-
NQ186_RS25525 (NQ186_25525)	pilS	5743476..5745065 (+)	1590	WP_093434840.1	PAS domain-containing sensor histidine kinase	Regulator
NQ186_RS25530 (NQ186_25530)	pilR	5745062..5746408 (+)	1347	WP_099757217.1	sigma-54 dependent transcriptional regulator	Regulator
NQ186_RS25535 (NQ186_25535)	thiO	5746540..5747640 (-)	1101	WP_257356143.1	glycine oxidase ThiO	-
NQ186_RS25540 (NQ186_25540)	-	5747698..5748099 (-)	402	WP_093434831.1	type IV pilin protein	-
NQ186_RS25545 (NQ186_25545)	-	5748115..5751204 (-)	3090	WP_093434828.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49975.30 Da
• Isoelectric Point: 6.6186

>NTDB_id=716410 NQ186_RS25530 WP_099757217.1 5745062..5746408(+) (pilR) [Pseudomonas zeae strain BIM B-582]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ASMLKRLAKDTGQPAARLHPQALAALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=716410 NQ186_RS25530 WP_099757217.1 5745062..5746408(+) (pilR) [Pseudomonas zeae strain BIM B-582]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAGCTCGACACCTACAGCGCACGCAATCTGGCTGAAGCCCAGGCGCTGCTGAACCGCGAGAGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACGGGGCTGGAGCTGGTGCAGCACATTCAGCAACGCTATCCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTCACCAA
ACCGGTGGACCTCACTCGTTTGCGCGAACTGGTCGGTACAGCCCTGCGCATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TCGATCGGCGCTTGCTCGGCGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCG
CCGGTGTACATCAGTGGCGAATCGGGCAGTGGCAAGGAACTGGTTGCGCGGCTGATCCATGAACAAGGGCCGCGCGCCGG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGCAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAACCCGGACTGTTTCAAGCCGCCCATGGCGGCACGTTGTTTCTTGATGAGGTGGCG
GACTTGCCGCTGTCGATGCAGGTAAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCAGAGGTCGCGGCCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCGTCCCTGCGCGAAAGACGTGATGATATTGAAGTGCTGGCG
GCCAGTATGCTCAAGCGTTTGGCCAAGGACACCGGCCAGCCGGCAGCACGCTTGCATCCACAGGCGTTGGCAGCGCTGAA
GAATTACCGGTTTCCGGGGAATGTGCGGGAGTTGGAAAACGTGCTTGAGCGGGCACACACCTTGTGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCGGACGGCGGGATTGCCGATCTGACGCAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAGAGGAAGCTGATCTTGCAGGCGCTGGAAGAAACACGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.91	98.884	0.79
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498