Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NRL37_RS00945 Genome accession   NZ_CP102328
Coordinates   193746..195239 (-) Length   497 a.a.
NCBI ID   WP_268193745.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain BC12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 188746..200239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL37_RS00935 (NRL37_00935) - 189646..191622 (+) 1977 WP_044400761.1 methyl-accepting chemotaxis protein -
  NRL37_RS00940 (NRL37_00940) betT 191663..193639 (-) 1977 WP_268193744.1 choline BCCT transporter BetT -
  NRL37_RS00945 (NRL37_00945) comM 193746..195239 (-) 1494 WP_268193745.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NRL37_RS00950 (NRL37_00950) - 195277..195540 (-) 264 WP_044400771.1 accessory factor UbiK family protein -
  NRL37_RS00955 (NRL37_00955) glnK 195951..196289 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  NRL37_RS00960 (NRL37_00960) - 196324..197643 (+) 1320 WP_044400778.1 ammonium transporter -
  NRL37_RS00965 (NRL37_00965) - 197761..198186 (+) 426 WP_044400781.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NRL37_RS00970 (NRL37_00970) sutA 198262..198582 (+) 321 WP_044400784.1 transcriptional regulator SutA -
  NRL37_RS00975 (NRL37_00975) - 198640..199344 (-) 705 WP_268193746.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52682.53 Da        Isoelectric Point: 7.5561

>NTDB_id=716184 NRL37_RS00945 WP_268193745.1 193746..195239(-) (comM) [Metapseudomonas otitidis strain BC12]
MSLALVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSALLTSGFEFPLRRITLSLAPADLPKEGGR
FDLAVALGILAASGQVPAAALEQLECLGELALSGALRPVQGVLPAALAARAAGRALVVPRENAEEASLASGLRVFAVGHL
LELAAHLNGQSPLAPFQSQGLPLQAAPYPDLADVQGQLAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASQSPLACWPQRPFRQPHHSASGPALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIIIARANDRVRFPARFQLVAAMNPCPCGYLGDDTHRCRCTPEQIQRYRARLSGPLLDRIDLHLTVAREATHLGAPVSG
GLDSATAAGEVGRARRRQLARQGCANAFLDLSRLHQHCPLTPDDQHWLEQACERLGLSLRAAHRLIKVARTLADLADAPD
IQRQHLAEALQYRPTSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=716184 NRL37_RS00945 WP_268193745.1 193746..195239(-) (comM) [Metapseudomonas otitidis strain BC12]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCACCCGCCGTCACGGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGTCCCTGGCCCTGGTCGGCCTCCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCACCAGCGGTTTCGAATTCCCCCTGCGGCGTATCACCCTCAGCCTTGCACCGGCCGATCTTCCCAAGGAAGGCGGACGC
TTCGACCTGGCCGTCGCCCTCGGCATCCTCGCGGCCAGCGGCCAGGTGCCCGCCGCAGCCCTGGAGCAGTTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGTGCCCTGCGTCCGGTGCAGGGCGTGTTGCCCGCTGCGCTGGCGGCTCGCGCTGCCGGAC
GGGCGCTGGTGGTGCCCCGGGAAAACGCCGAGGAGGCCAGCCTGGCCAGCGGCCTGAGGGTGTTCGCCGTGGGCCACCTG
CTGGAGCTGGCCGCCCACCTCAACGGCCAGTCGCCACTGGCACCCTTCCAGAGCCAGGGCCTGCCGCTGCAGGCCGCGCC
CTATCCCGATCTCGCCGACGTCCAGGGCCAGCTGGCGGCCAAGCGTGCGCTGCTGGTGGCCGCCGCCGGAGCCCACAACC
TGCTGCTGTCCGGCCCGCCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCTCCGCTGGAGGAA
CACGAGGCTCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCAATCGCCGCTGGCGTGCTGGCCCCAGCGTCCCTTCAG
GCAGCCTCACCACAGCGCGTCCGGCCCGGCCCTGGTGGGTGGCGGCAGTCGTCCGAAACCCGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTCCTCCGAGAGCCCCTGGAAAGC
GGCGAGATCATCATCGCCCGGGCCAATGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACGACACCCACCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGGGCCCGGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAAGCCACGCACCTGGGCGCGCCCGTCAGCGGC
GGGCTCGACAGTGCCACCGCCGCCGGGGAAGTCGGACGAGCCCGGCGTCGGCAACTGGCTCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGTCCCGGCTGCACCAGCACTGTCCGCTGACGCCCGACGACCAGCATTGGCTGGAGCAGGCCTGCGAGC
GCCTCGGGTTGTCCCTGCGTGCCGCGCACCGGCTGATCAAGGTGGCCCGCACCCTCGCCGACCTGGCGGACGCGCCCGAC
ATCCAGCGCCAGCACCTGGCGGAAGCCCTGCAGTACCGGCCGACCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.74

100

0.567
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.09

100

0.555
  comM Glaesserella parasuis strain SC1401

54.98

100

0.555
  comM Legionella pneumophila str. Paris

50

100

0.509
  comM Legionella pneumophila strain ERS1305867

50

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459