Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NRK98_RS20505 Genome accession   NZ_CP102325
Coordinates   4511219..4511794 (-) Length   191 a.a.
NCBI ID   WP_005306061.1    Uniprot ID   K1JJU3
Organism   Aeromonas dhakensis strain BC03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4506219..4516794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK98_RS20480 (NRK98_20480) - 4507677..4507886 (-) 210 WP_005306081.1 cold-shock protein -
  NRK98_RS20485 (NRK98_20485) - 4508375..4508659 (-) 285 WP_017785534.1 DUF3811 domain-containing protein -
  NRK98_RS20490 (NRK98_20490) - 4508755..4509633 (-) 879 WP_024941267.1 cation diffusion facilitator family transporter -
  NRK98_RS20495 (NRK98_20495) - 4510082..4510207 (+) 126 WP_019445191.1 hypothetical protein -
  NRK98_RS20500 (NRK98_20500) - 4510291..4511049 (-) 759 WP_005306064.1 substrate-binding periplasmic protein -
  NRK98_RS20505 (NRK98_20505) ssb 4511219..4511794 (-) 576 WP_005306061.1 single-stranded DNA-binding protein Machinery gene
  NRK98_RS20510 (NRK98_20510) - 4512311..4512970 (+) 660 WP_010635910.1 LuxR C-terminal-related transcriptional regulator -
  NRK98_RS20515 (NRK98_20515) uvrA 4513066..4515894 (+) 2829 WP_005306056.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21162.54 Da        Isoelectric Point: 5.9247

>NTDB_id=716121 NRK98_RS20505 WP_005306061.1 4511219..4511794(-) (ssb) [Aeromonas dhakensis strain BC03]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGAGQGMGGQSQGNWGQPQQGMQSQQPMNQSRPAPQQNMQQQ
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=716121 NRK98_RS20505 WP_005306061.1 4511219..4511794(-) (ssb) [Aeromonas dhakensis strain BC03]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAATCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCGGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAAACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGTTACACCACCGAGGTGCTGGTCGATGGTTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGCATGGGCGGTCAGTCCCAGGGCAACTGGG
GTCAGCCGCAACAGGGCATGCAGTCCCAGCAGCCGATGAACCAGTCCCGCCCGGCTCCGCAGCAGAACATGCAGCAACAG
CAGGGCGGTTATAGCCGTCCGGCCCAGCAGCCGCAGTCCGCTCCGCCGGTATACAACGAGCCGCCGATGGATTTCGACGA
CGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.388

100

0.712
  ssb Glaesserella parasuis strain SC1401

52.381

98.953

0.518
  ssb Neisseria gonorrhoeae MS11

47.059

97.906

0.461
  ssb Neisseria meningitidis MC58

45.699

97.382

0.445