Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NRK98_RS19250 Genome accession   NZ_CP102325
Coordinates   4247448..4248962 (-) Length   504 a.a.
NCBI ID   WP_268027858.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4242448..4253962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK98_RS19225 (NRK98_19225) - 4243578..4244213 (-) 636 WP_268027854.1 nicotinamidase -
  NRK98_RS19230 (NRK98_19230) - 4244289..4244939 (+) 651 WP_005306829.1 NUDIX hydrolase -
  NRK98_RS19235 (NRK98_19235) - 4245040..4245525 (+) 486 WP_268027855.1 DUF523 domain-containing protein -
  NRK98_RS19240 (NRK98_19240) - 4245471..4246424 (-) 954 WP_268027856.1 acyltransferase -
  NRK98_RS19245 (NRK98_19245) - 4246418..4247332 (-) 915 WP_268027857.1 acyltransferase -
  NRK98_RS19250 (NRK98_19250) comM 4247448..4248962 (-) 1515 WP_268027858.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NRK98_RS19255 (NRK98_19255) ilvG 4249347..4250993 (+) 1647 WP_268027859.1 acetolactate synthase 2 catalytic subunit -
  NRK98_RS19260 (NRK98_19260) ilvM 4250990..4251241 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  NRK98_RS19265 (NRK98_19265) - 4251254..4252198 (+) 945 WP_268027860.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54643.52 Da        Isoelectric Point: 7.3080

>NTDB_id=716120 NRK98_RS19250 WP_268027858.1 4247448..4248962(-) (comM) [Aeromonas dhakensis strain BC03]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDHQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=716120 NRK98_RS19250 WP_268027858.1 4247448..4248962(-) (comM) [Aeromonas dhakensis strain BC03]
ATGTCATTAGCTGTGGTTTATAGCCGTGCTAGCCTGGGGATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAATATGGTGGGACTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTCCCCTCCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCAGCAAAATATCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCACTGCCGGATCACCAGACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAATCCCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCTCGGGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAACGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.5

100

0.625
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466