Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   URS_RS03770 Genome accession   NZ_AP018824
Coordinates   767888..769372 (+) Length   494 a.a.
NCBI ID   WP_005001768.1    Uniprot ID   N9DJ20
Organism   Acinetobacter ursingii strain M3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 762888..774372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS03745 (URS_0771) ribD 763836..764936 (-) 1101 WP_010588816.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  URS_RS03750 (URS_0772) nrdR 764929..765396 (-) 468 WP_005001774.1 transcriptional regulator NrdR -
  URS_RS03755 (URS_0774) - 765513..766915 (-) 1403 Protein_729 ammonium transporter -
  URS_RS03760 (URS_0775) glnK 766978..767316 (-) 339 WP_004656379.1 P-II family nitrogen regulator -
  URS_RS03765 (URS_0777) - 767592..767819 (+) 228 WP_005001770.1 accessory factor UbiK family protein -
  URS_RS03770 (URS_0778) comM 767888..769372 (+) 1485 WP_005001768.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  URS_RS03775 (URS_0779) - 769424..770236 (-) 813 WP_010588817.1 TorF family putative porin -
  URS_RS03780 (URS_0781) - 770845..772140 (+) 1296 WP_005001763.1 OprD family outer membrane porin -
  URS_RS03785 (URS_0782) ppa 772217..772744 (-) 528 WP_004995387.1 inorganic diphosphatase -
  URS_RS03790 (URS_0783) - 772900..773298 (-) 399 WP_005001756.1 MAPEG family protein -
  URS_RS03795 (URS_0784) - 773414..773800 (+) 387 WP_005001754.1 hypothetical protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54559.66 Da        Isoelectric Point: 7.8034

>NTDB_id=71567 URS_RS03770 WP_005001768.1 767888..769372(+) (comM) [Acinetobacter ursingii strain M3]
MSFAKILTRGVLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPEACTDGFEFIGELALDGHLRPVTSALSIAMACQQAQRQLFIPKANLEQVEQLSEFQLYSANHL
KQVCEHFLGVQPIPAHITQNNNHTQAYKYDLIDVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QENLEVASIYSIANNQHHFGLRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQANELQNNVPVE
DSMTVRKRVMSAYDSQIQRQQKANFALSPQELEQYAVLDAHAEKMMEVAQQRMNLSARSYHRILRVARTIADLSHSPNIE
ITHLSEALSYRQKI

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=71567 URS_RS03770 WP_005001768.1 767888..769372(+) (comM) [Acinetobacter ursingii strain M3]
ATGTCTTTTGCAAAGATTTTAACTCGCGGGGTATTAGGGTTACATGCTCCTTTAATTGAGGTCGAAGTTCATTTAAGTCA
GGGGCTTCCCTCACTCACGATCGTTGGGCTAGCAGAAGCAGCGGTACGTGAAAGTAAGGATCGAGTACGCTCTGCGATTA
TTAACAGTGGTTTTCAGTTTCCAACCAAACGCCTGACCATTAATCTGGCACCAGCGGATCTGCCGAAAGATGGATCCCGT
CTTGATCTCGCCATTGCTTTAGGGATTCTGATTGCCTCTGGACAATTGCCTGAAGCCTGTACAGATGGATTTGAATTTAT
TGGAGAATTGGCTTTGGATGGGCATTTAAGACCCGTCACCAGCGCTCTAAGCATAGCGATGGCGTGTCAACAAGCGCAAC
GTCAGCTTTTTATTCCTAAGGCGAATCTTGAACAGGTGGAACAGCTTTCTGAATTTCAACTTTATTCAGCCAACCACTTA
AAACAGGTCTGTGAACATTTTCTGGGAGTACAGCCTATTCCTGCTCATATCACTCAAAATAACAATCATACTCAAGCTTA
TAAATATGATCTGATTGATGTAAAAGGACAATTACGGCCACGTCGTGCACTTGAAATTGCCGCAGCTGGAGGACACTCTT
TATTATTTAAGGGGCCACCGGGTACTGGTAAAACTTTGTTAGCTTCGCGTCTACCTAGCATTTTGCCGCCGTTATCAACA
CAGGAAAATCTTGAAGTCGCCAGTATCTACTCGATTGCCAATAATCAGCATCATTTTGGTTTACGTCCTTTTCGAGCACC
GCATCACACGGCTTCTGCGATTGCATTGGTAGGTGGAGGCTCACATCCTAAACCCGGAGAAATTACACTGGCTCATTTAG
GCGTTTTATTTTTAGATGAGTTACCAGAATTTGATCGCAAAGTGCTTGAAGTATTACGACAACCACTTGAATCTAAAGAA
ATCGTGATTTCACGTGCATCTCGACAAATTACCTTTCCTGCTAATTTTCAGTTGATTGCAGCAATGAATCCATGTCCATG
TGGCTATGCATTTAATCAGGATAGTCGCTGCCAGTGTTCGCCTGAATCAATTCAACGTTATCAAAATCGAATTTCAGGAC
CTTTGCTGGATCGAATCGATTTACATATTGATGTTCCTCCATTACAAGCCAATGAATTGCAAAATAATGTACCTGTAGAA
GATTCTATGACTGTACGTAAACGTGTGATGAGTGCTTATGACTCTCAAATTCAGCGTCAACAAAAAGCAAATTTTGCACT
TTCACCCCAAGAATTAGAACAATATGCGGTACTGGATGCGCATGCTGAAAAAATGATGGAAGTTGCGCAACAACGTATGA
ATTTATCGGCGCGCTCTTATCATCGTATTTTACGTGTTGCACGTACTATTGCAGATTTATCACACAGTCCTAATATTGAA
ATTACACATTTATCAGAAGCGTTGTCATATCGACAAAAGATTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9DJ20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.613

100

0.518
  comM Glaesserella parasuis strain SC1401

51

100

0.516
  comM Vibrio campbellii strain DS40M4

50.909

100

0.51
  comM Haemophilus influenzae Rd KW20

49.602

100

0.504
  comM Legionella pneumophila str. Paris

48.413

100

0.494
  comM Legionella pneumophila strain ERS1305867

48.413

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.849

100

0.447

Multiple sequence alignment