Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NQ230_RS01075 Genome accession   NZ_CP102247
Coordinates   232031..233551 (-) Length   506 a.a.
NCBI ID   WP_159515126.1    Uniprot ID   -
Organism   Enterobacter asburiae strain R_A5.MM     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 227031..238551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ230_RS01065 (NQ230_01065) hdfR 230722..231543 (-) 822 WP_029739573.1 HTH-type transcriptional regulator HdfR -
  NQ230_RS01070 (NQ230_01070) - 231662..232000 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  NQ230_RS01075 (NQ230_01075) comM 232031..233551 (-) 1521 WP_159515126.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NQ230_RS01080 (NQ230_01080) ilvL 233893..233991 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NQ230_RS01085 (NQ230_01085) ilvX 234078..234128 (+) 51 WP_193941730.1 peptide IlvX -
  NQ230_RS01090 (NQ230_01090) ilvG 234131..235777 (+) 1647 WP_193941726.1 acetolactate synthase 2 catalytic subunit -
  NQ230_RS01095 (NQ230_01095) ilvM 235774..236037 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  NQ230_RS01100 (NQ230_01100) ilvE 236056..236985 (+) 930 WP_023326297.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54923.85 Da        Isoelectric Point: 6.9623

>NTDB_id=715452 NQ230_RS01075 WP_159515126.1 232031..233551(-) (comM) [Enterobacter asburiae strain R_A5.MM]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=715452 NQ230_RS01075 WP_159515126.1 232031..233551(-) (comM) [Enterobacter asburiae strain R_A5.MM]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGTAA
CGGACTCCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAGGAGGCCAGGGATCGCGTACGCAGCGCAATAA
TAAATAGCGGTTATGCCTTCCCCGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGGGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGCCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGACATGAACTGTCCGAGCCGGAGGAATGTGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGGCAAGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAACCTTT
TGTTAATTGGTCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTGAGTGGGTTGCTTCCACCGCTTAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATACAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCACCATAGCGCTTCACTGACGGCAATGGTCGGCGGAGGGTCTATCCCCGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGCGAGATACATATCTCACGTACGCGAGCCAAAATAAGCTATCCCGCGCGGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTACGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGTATAACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTCTGTTCTCTTAACGTCGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTACTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441