Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQ842_RS22620 Genome accession   NZ_CP102246
Coordinates   4790838..4791362 (-) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter cloacae complex sp. R_G8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4785838..4796362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ842_RS22595 (NQ842_22595) - 4786382..4787053 (-) 672 WP_014830297.1 glutathione S-transferase family protein -
  NQ842_RS22600 (NQ842_22600) soxR 4787368..4787826 (-) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -
  NQ842_RS22605 (NQ842_22605) soxS 4787924..4788250 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  NQ842_RS22610 (NQ842_22610) - 4788257..4789822 (-) 1566 WP_047360212.1 EAL domain-containing protein -
  NQ842_RS22615 (NQ842_22615) - 4790494..4790775 (+) 282 WP_008503385.1 YjcB family protein -
  NQ842_RS22620 (NQ842_22620) ssb 4790838..4791362 (-) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NQ842_RS22625 (NQ842_22625) uvrA 4791614..4794436 (+) 2823 WP_257256358.1 excinuclease ABC subunit UvrA -
  NQ842_RS22630 (NQ842_22630) - 4794440..4794793 (-) 354 WP_257256359.1 MmcQ/YjbR family DNA-binding protein -
  NQ842_RS22635 (NQ842_22635) - 4794796..4795212 (-) 417 WP_047360211.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NQ842_RS22640 (NQ842_22640) aphA 4795325..4796038 (-) 714 WP_096928752.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=715448 NQ842_RS22620 WP_008503384.1 4790838..4791362(-) (ssb) [Enterobacter cloacae complex sp. R_G8]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=715448 NQ842_RS22620 WP_008503384.1 4790838..4791362(-) (ssb) [Enterobacter cloacae complex sp. R_G8]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAATACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAATCCGCACCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368