Detailed information NTG0715315

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LOY40_RS28265
• Genome accession: NZ_CP102179
• Coordinates: 6239503..6240996 (+)
• Length: 497 a.a.
• NCBI ID: WP_198797540.1
• Uniprot ID: -
• Organism: Pseudomonas alvandae strain B21-020
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 6234503..6245996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY40_RS28235 (LOY40_28235)	sutA	6234552..6234875 (-)	324	WP_007941277.1	transcriptional regulator SutA	-
LOY40_RS28240 (LOY40_28240)	-	6234977..6235402 (-)	426	WP_030138180.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
LOY40_RS28245 (LOY40_28245)	-	6235615..6236949 (-)	1335	WP_030138181.1	ammonium transporter	-
LOY40_RS28250 (LOY40_28250)	glnK	6236983..6237321 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
LOY40_RS28255 (LOY40_28255)	-	6237737..6237997 (+)	261	WP_030138193.1	accessory factor UbiK family protein	-
LOY40_RS28260 (LOY40_28260)	-	6238004..6239281 (-)	1278	WP_198797539.1	sensor histidine kinase	-
LOY40_RS28265 (LOY40_28265)	comM	6239503..6240996 (+)	1494	WP_198797540.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
LOY40_RS28270 (LOY40_28270)	-	6241003..6242217 (-)	1215	WP_198797541.1	aldose 1-epimerase family protein	-
LOY40_RS28275 (LOY40_28275)	-	6242591..6244567 (-)	1977	WP_258648516.1	methyl-accepting chemotaxis protein	-
LOY40_RS28280 (LOY40_28280)	-	6244753..6245673 (-)	921	WP_030138186.1	LysR substrate-binding domain-containing protein	-
LOY40_RS28285 (LOY40_28285)	-	6245707..6245832 (-)	126	WP_258648517.1	hypothetical protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52889.97 Da
• Isoelectric Point: 7.8814

>NTDB_id=715315 LOY40_RS28265 WP_198797540.1 6239503..6240996(+) (comM) [Pseudomonas alvandae strain B21-020]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLMLDDVECLGELALSGAVRPVRGVLPAALAARAAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASRPYPDLSEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKGEP
GGDTATAAERVAEARERQQIRQGCANAFLDLPGLRQHCKLSTADEAWLETACERLTLSLRAAHRLLKVARTLADLEHVQR
ISREHLAEALQYRPTTA

Nucleotide

• Length: 1494 bp

>NTDB_id=715315 LOY40_RS28265 WP_198797540.1 6239503..6240996(+) (comM) [Pseudomonas alvandae strain B21-020]
ATGTCGCTCGCCATTGTCCACAGCCGCGCCCAGGTGGGGGTGGAGGCTCCCGCCGTTACCGTTGAAGTTCATCTGGCCAA
TGGCTTGCCGTCACTGACGATGGTCGGTCTGCCAGAGGCAGCAGTGAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGACTCAATTTCCCGGCACGACGCATCACCCTCAACCTCGCGCCGGCAGACCTGCCCAAGGACGGCGGGCGG
TTCGACCTGGCGATTGCCCTTGGCATCCTGTCCGCCAGCGTGCAGGTGCCAACGCTGATGCTGGACGACGTCGAGTGCCT
CGGTGAGCTGGCGTTGTCCGGCGCCGTGCGACCGGTACGCGGCGTTCTGCCGGCAGCACTGGCGGCACGCGCGGCCGGGC
GGATGCTGGTGGTGCCGCGAGCGAATGCCGAGGAGGCCTGCCTGGCCTCGGGGTTGAAAGTGATCGCCGTGGATCATCTG
CTCGAAGCGGTGGCGCATTTCAACGGCCACACACCCGTCGAGCCCTTTGTTTCCAACGGGCTGCTCTCGGCCAGCAGGCC
GTACCCCGATCTCAGCGAAGTCCAAGGGCAGGCAGGTGCCAAGCGCGCGCTACTGATCGCCGCAGCGGGCGCTCATAACC
TGTTGTTCAGCGGCCCACCGGGCACCGGCAAGACTCTGCTGGCGAGCCGTTTGCCAGGGCTGTTGCCGCCACTGGCCGAA
AGCGAGGCCCTGGAGGTCGCAGCCATCCAGTCGGTGGCCAGCTGCGTGCCGTTGAGCCATTGGCCGCAACGTCCGTTTCG
CCAGCCGCATCACTCGGCTTCCGGCCCTGCGCTGGTAGGCGGCGGATCCAAGCCACAACCGGGGGAAATCACCCTCGCCC
ACCATGGTGTCCTGTTCCTGGATGAGCTGCCGGAGTTCGACCGCAAGGTGCTAGAAGTGCTGAGGGAACCATTGGAGTCC
GGTCACATTGTGATTTCCCGAGCCCGCGACCGCGTGCGCTTCCCGGCGCGCTTCCAACTGGTCGCGGCAATGAATCCCTG
TCCCTGTGGATACCTCGGCGAGCCCAGCGGCCGTTGCTCCTGCACGCCCGACATGGTGCAGCGTTACCGCAATAAACTGT
CCGGCCCCTTGCTTGATCGCATCGACCTGCACCTGACCGTTGCACGGGAGGCCACGGCGCTGAATCCGAAAGGCGAACCC
GGTGGCGACACGGCCACCGCGGCCGAGCGGGTGGCCGAAGCCCGGGAGCGCCAGCAAATACGTCAAGGTTGCGCCAATGC
ATTCCTGGACCTGCCGGGCTTGCGCCAGCATTGCAAACTCTCCACCGCCGACGAAGCCTGGCTGGAAACCGCCTGCGAAC
GACTGACCCTGTCGTTGCGAGCCGCTCATCGCCTGCTCAAGGTCGCCCGGACCCTGGCCGACCTTGAGCATGTGCAGCGG
ATCAGCCGGGAACACCTGGCCGAAGCGCTGCAGTATCGGCCGACCACGGCCTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.96	99.598	0.557
comM	Vibrio campbellii strain DS40M4	55.556	99.598	0.553
comM	Glaesserella parasuis strain SC1401	53.8	100	0.541
comM	Haemophilus influenzae Rd KW20	53.707	100	0.539
comM	Legionella pneumophila str. Paris	50.202	99.799	0.501
comM	Legionella pneumophila strain ERS1305867	50.202	99.799	0.501
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.429	100	0.471