Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DLM_RS00360 Genome accession   NZ_AP018823
Coordinates   66774..68273 (+) Length   499 a.a.
NCBI ID   WP_089083797.1    Uniprot ID   A0A3G9GDS0
Organism   Aquitalea magnusonii strain H3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 61774..73273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM_RS00335 (DLM_0065) - 62244..63137 (-) 894 WP_089083802.1 lysophospholipid acyltransferase family protein -
  DLM_RS00340 (DLM_0066) metK 63215..64384 (+) 1170 WP_089083801.1 methionine adenosyltransferase -
  DLM_RS00345 (DLM_0067) - 64532..65842 (-) 1311 WP_089083800.1 ammonium transporter -
  DLM_RS00350 (DLM_0068) glnK 65873..66211 (-) 339 WP_089083799.1 P-II family nitrogen regulator -
  DLM_RS00355 (DLM_0069) - 66480..66767 (+) 288 WP_089083798.1 accessory factor UbiK family protein -
  DLM_RS00360 (DLM_0070) comM 66774..68273 (+) 1500 WP_089083797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DLM_RS00365 (DLM_0071) - 68347..69099 (+) 753 WP_089083796.1 SPOR domain-containing protein -
  DLM_RS00370 (DLM_0072) - 69126..69743 (+) 618 WP_089083828.1 thiol:disulfide interchange protein DsbA/DsbL -
  DLM_RS00380 (DLM_0074) purB 70147..71517 (-) 1371 WP_089083795.1 adenylosuccinate lyase -
  DLM_RS00385 (DLM_0075) - 71584..72486 (-) 903 WP_089083794.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52913.77 Da        Isoelectric Point: 7.0899

>NTDB_id=71529 DLM_RS00360 WP_089083797.1 66774..68273(+) (comM) [Aquitalea magnusonii strain H3]
MALALVASRALAGLQAPEVAVEVHLANGLPQFTIVGLPDTEVKESRDRVRAAIINSGFEFPARRITVNLAPADLPKDSGR
FDLPIAVGILVAAGIIQCPHLSDYEFAGELALSGQLRGVRGALAMACQTSRAGKSFILPRVSANEAALVGSGQVYAADSL
LQVCAHLNGVQACDLAEVNLDASQDVYPDLADVKGQMAARYALEVAAAGGHSLLFVGPPGTGKSMLAARLPGILPEMSEE
EALASAAIQSLGSQGFRAEKWRQRPFRAPHHTASAVALVGGGSDPRPGEVSLAHHGVLFLDELPEFERKVLEVLREPLES
QVINISRAGRQACFPADFQLLAAMNPCPCGYMGHASGRCQCTPEQIARYVGKLSGPLLDRIDMHVQVPALAAGELASVST
GEASPQIRLRVQQARDRQLQRQGCCNARLSGLALEQHASAEPAALALLADALDRLGLSARSYHRILRIARTIADMNGDLG
LNRQHMLQAIQLRRSGLAL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=71529 DLM_RS00360 WP_089083797.1 66774..68273(+) (comM) [Aquitalea magnusonii strain H3]
ATGGCGCTAGCACTGGTTGCAAGTCGCGCCCTGGCCGGCTTGCAAGCCCCGGAGGTTGCGGTGGAAGTCCATCTGGCCAA
TGGGCTGCCGCAGTTCACCATCGTTGGCTTGCCTGATACCGAGGTCAAAGAGAGTCGCGACAGGGTACGTGCTGCCATCA
TCAATTCCGGTTTCGAGTTTCCGGCACGCCGCATCACCGTCAATCTGGCTCCTGCAGACCTGCCCAAAGATTCTGGCCGG
TTTGATCTGCCGATTGCCGTCGGGATTCTGGTGGCGGCAGGAATCATCCAGTGTCCCCACTTGTCTGACTATGAGTTTGC
CGGTGAACTTGCGCTTAGCGGACAATTGCGCGGCGTCCGCGGCGCACTTGCCATGGCGTGTCAGACCAGCAGGGCAGGCA
AGTCCTTCATTCTTCCCAGAGTAAGTGCTAACGAAGCGGCGCTGGTCGGATCTGGCCAGGTTTATGCCGCTGACAGTCTG
TTGCAGGTCTGTGCGCATCTGAATGGTGTGCAGGCTTGTGATCTGGCCGAAGTCAACCTGGATGCAAGCCAGGACGTTTA
TCCTGATCTGGCTGACGTCAAAGGGCAAATGGCTGCGCGCTATGCCTTGGAAGTGGCCGCCGCTGGCGGGCATAGCCTGT
TGTTTGTCGGGCCTCCGGGTACCGGCAAATCCATGCTGGCGGCGCGTCTTCCAGGCATATTGCCCGAGATGAGTGAGGAA
GAGGCTCTGGCTTCTGCCGCGATACAGTCCTTGGGGTCTCAGGGCTTTAGAGCGGAGAAGTGGCGCCAGCGTCCCTTCAG
GGCACCGCACCATACCGCGTCTGCGGTTGCCTTGGTCGGTGGCGGATCAGATCCGCGGCCGGGAGAAGTAAGTCTTGCAC
ATCACGGGGTATTGTTTCTGGACGAGTTGCCGGAATTCGAACGTAAGGTGCTTGAAGTATTGCGTGAACCTTTGGAGTCA
CAGGTAATCAATATTTCCCGTGCCGGGAGGCAAGCCTGTTTTCCTGCTGACTTCCAGTTGCTGGCTGCCATGAATCCCTG
CCCGTGCGGTTATATGGGGCATGCTTCCGGGCGATGTCAGTGTACCCCGGAGCAAATTGCCCGCTATGTGGGAAAGCTGT
CTGGCCCGCTGCTGGACCGGATTGATATGCATGTACAGGTTCCTGCCTTGGCCGCAGGAGAACTTGCGTCAGTCAGCACA
GGTGAAGCCAGCCCTCAGATACGCTTGCGTGTGCAGCAGGCTCGGGACCGGCAGTTGCAACGACAGGGCTGCTGTAATGC
CAGGTTAAGTGGCTTGGCGCTGGAGCAGCACGCCTCCGCGGAGCCAGCGGCTCTGGCCTTACTGGCCGATGCGCTGGATC
GGCTTGGATTGTCAGCAAGAAGCTATCACCGCATCCTGCGCATTGCCCGGACTATTGCTGATATGAACGGCGATTTGGGT
TTAAATCGGCAGCACATGCTCCAGGCGATTCAATTACGCCGTAGCGGCCTGGCTTTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9GDS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.198

0.541
  comM Vibrio campbellii strain DS40M4

52.727

99.198

0.523
  comM Haemophilus influenzae Rd KW20

50.699

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.501
  comM Legionella pneumophila str. Paris

50

99.8

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.8

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

100

0.431

Multiple sequence alignment