Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY71_RS25715 Genome accession   NZ_CP102176
Coordinates   5879042..5880535 (+) Length   497 a.a.
NCBI ID   WP_265086346.1    Uniprot ID   -
Organism   Pseudomonas mediterranea strain B21-060     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5874042..5885535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY71_RS25695 (LOY71_25700) - 5874654..5874914 (+) 261 WP_047702563.1 accessory factor UbiK family protein -
  LOY71_RS25700 (LOY71_25705) - 5874935..5876209 (-) 1275 WP_047702564.1 sensor histidine kinase -
  LOY71_RS25705 (LOY71_25710) - 5876664..5878430 (+) 1767 WP_265086344.1 S-type pyocin domain-containing protein -
  LOY71_RS25710 (LOY71_25715) - 5878447..5878707 (+) 261 WP_265086345.1 bacteriocin immunity protein -
  LOY71_RS25715 (LOY71_25720) comM 5879042..5880535 (+) 1494 WP_265086346.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY71_RS25720 (LOY71_25725) - 5880542..5881756 (-) 1215 WP_047702566.1 aldose 1-epimerase family protein -
  LOY71_RS27005 - 5882196..5883056 (-) 861 WP_406822794.1 methyl-accepting chemotaxis protein -
  LOY71_RS27010 - 5883099..5884226 (-) 1128 Protein_5077 Cache 3/Cache 2 fusion domain-containing protein -
  LOY71_RS25730 (LOY71_25735) - 5884361..5885281 (-) 921 WP_047702568.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52906.97 Da        Isoelectric Point: 7.6675

>NTDB_id=715256 LOY71_RS25715 WP_265086346.1 5879042..5880535(+) (comM) [Pseudomonas mediterranea strain B21-060]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRILVVPRANAEEACLASGLKVIAVDHL
LEVVAHFNGHAPVEPFVSNGLLSASKPYPDLNEVQGQLGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKCEP
GEDTATVAEQVAEARERQQTRQGCANAFLDLPGLRRHCTLSTADETWLETACERLTLSLRAAHRLLKVARTLADLEQAGR
ISREHLAEALQYRPATA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=715256 LOY71_RS25715 WP_265086346.1 5879042..5880535(+) (comM) [Pseudomonas mediterranea strain B21-060]
ATGTCGCTCGCCATTGTCCATAGCCGCGCCCAGGTGGGGGTGGAGGCTCCCGCCGTTACCGTTGAGGTCCATCTTGCCAA
TGGCCTGCCGTCACTGACGATGGTCGGTCTGCCGGAAGCGGCGGTAAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCGCGGCGCATTACCTTGAACCTGGCACCGGCGGACCTGCCGAAGGACGGCGGGCGG
TTCGACCTGGCCATTGCCCTGGGGATCCTGGCGGCCAGCGTGCAGGTGCCGACCCTGACGCTGGACGATGTGGAATGCCT
CGGTGAGCTGGCATTATCCGGCGCCGTGCGACCAGTGCGCGGGGTATTGCCCGCAGCGCTGGCGGCGCGCAAGGCCGGAC
GCATTCTGGTGGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTTGCCTCGGGCCTGAAAGTGATCGCCGTGGATCATCTG
CTTGAAGTGGTGGCGCACTTCAACGGTCACGCTCCGGTCGAGCCTTTCGTTTCGAACGGCCTGCTCTCGGCCAGCAAGCC
CTACCCTGACCTGAATGAAGTGCAAGGCCAGCTCGGGGCCAAGCGGGCCTTGCTGATCGCTGCCGCCGGCGCGCACAACC
TGCTGTTCAGCGGGCCACCCGGTACCGGCAAGACATTGCTCGCCAGTCGTCTGCCGGGACTGCTGCCGCCACTGGCCGAG
AGCGAAGCCCTGGAGGTCGCGGCGATCCAGTCGGTCGCCAGTTGCGTACCCTTGAGCCATTGGCCGCAACGCCCTTTTCG
CCAGCCCCATCATTCGGCATCCGGTCCGGCGCTGGTGGGTGGAGGTTCCAAACCCCAGCCGGGCGAGATCACCCTGGCCC
ACCATGGCGTGTTATTCCTGGATGAATTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTCCTGCGGGAGCCACTCGAATCG
GGCCACATCGTCGTGTCTCGTGCCCGCGACCGCGTACGCTTTCCGGCGCGCTTCCAACTGGTGGCTGCGATGAATCCTTG
TCCTTGTGGATATCTTGGCGAGCCCAGTGGCCGTTGCTCCTGCACACCCGACATGGTGCAGCGCTATCGCAACAAGCTCT
CAGGCCCGTTGCTGGATCGCATCGACCTGCACCTGACGGTCGCACGGGAGGCCACGGCGTTGAATCCCAAATGCGAACCG
GGTGAGGACACGGCTACCGTGGCCGAACAGGTGGCCGAAGCCCGAGAACGCCAGCAGACGCGCCAGGGCTGTGCCAACGC
GTTTCTGGACCTGCCGGGTTTGCGTCGGCATTGCACGTTATCCACAGCCGATGAAACCTGGCTGGAAACGGCCTGCGAGC
GACTGACTCTGTCGCTGCGGGCCGCCCATCGCCTGCTCAAGGTCGCGCGGACACTGGCGGACCTTGAGCAAGCGGGCCGT
ATCAGCCGGGAGCACCTGGCCGAAGCCTTGCAATACCGACCTGCTACGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Vibrio cholerae strain A1552

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.309

100

0.545
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

100

0.473