Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NQ200_RS19795 Genome accession   NZ_CP102172
Coordinates   4334338..4335852 (+) Length   504 a.a.
NCBI ID   WP_309265855.1    Uniprot ID   -
Organism   Aeromonas salmonicida subsp. masoucida strain wx3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4329338..4340852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ200_RS19780 - 4331066..4332007 (-) 942 WP_219591487.1 branched-chain amino acid transaminase -
  NQ200_RS19785 ilvM 4332020..4332310 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  NQ200_RS19790 ilvG 4332307..4333953 (-) 1647 WP_309265854.1 acetolactate synthase 2 catalytic subunit -
  NQ200_RS19795 comM 4334338..4335852 (+) 1515 WP_309265855.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NQ200_RS19800 - 4335989..4336888 (+) 900 WP_309265856.1 acyltransferase -
  NQ200_RS19805 - 4337047..4337544 (-) 498 WP_309265857.1 DUF523 domain-containing protein -
  NQ200_RS19810 - 4337541..4338191 (-) 651 WP_011898224.1 NUDIX hydrolase -
  NQ200_RS19815 - 4338266..4338901 (+) 636 WP_309265858.1 nicotinamidase -
  NQ200_RS19820 pncB 4339003..4340181 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54632.62 Da        Isoelectric Point: 7.9894

>NTDB_id=715158 NQ200_RS19795 WP_309265855.1 4334338..4335852(+) (comM) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPVPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKAHLIEALGYRAMDRLLSRLRNG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=715158 NQ200_RS19795 WP_309265855.1 4334338..4335852(+) (comM) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACGTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCTGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTACTGCCCGCCGTACTTGCCTGCCGCGATGCGGGAC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGTGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAATCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCGCCCCTGAGCGAGCAG
GAGGCGCAGCAAACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCATCACAGTGCCTCAGCCGTGGCCCTGGTGGGCGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGTTGCCGGAGTTCGAACGCAAGGTGCTGGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTAGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAAATCCGCGATCGGGTGCTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTAGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGCCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTATCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGCTCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAACGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.492

100

0.635
  comM Haemophilus influenzae Rd KW20

61.417

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466