Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   NQZ88_RS10700 Genome accession   NZ_CP102152
Coordinates   2163023..2164219 (+) Length   398 a.a.
NCBI ID   WP_009911075.1    Uniprot ID   G7SHV4
Organism   Streptococcus suis strain DNS11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2158023..2169219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ88_RS10670 (NQZ88_10670) - 2158682..2161261 (+) 2580 WP_012028056.1 YfhO family protein -
  NQZ88_RS10690 (NQZ88_10690) - 2161662..2162345 (-) 684 WP_012775416.1 YoaK family protein -
  NQZ88_RS10695 (NQZ88_10695) rlmH 2162370..2162849 (-) 480 WP_012028058.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NQZ88_RS10700 (NQZ88_10700) htrA 2163023..2164219 (+) 1197 WP_009911075.1 S1C family serine protease Regulator
  NQZ88_RS10705 (NQZ88_10705) spo0J 2164280..2165044 (+) 765 WP_014638879.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41818.83 Da        Isoelectric Point: 4.6655

>NTDB_id=715082 NQZ88_RS10700 WP_009911075.1 2163023..2164219(+) (htrA) [Streptococcus suis strain DNS11]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPRVQQANSAITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSKDGQTISTNAIQTDTAINPGNSGGPLIN
TQGQVIGITSSKITSSSANSSGVAVEGLGFAIPANDAVAIINQLEKTGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGEAIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=715082 NQZ88_RS10700 WP_009911075.1 2163023..2164219(+) (htrA) [Streptococcus suis strain DNS11]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTTTATTTGTAATTGGATTTTTTGGGGGTCTTATCGG
GGCCTTATCAGCCTCTTTCTTCCAGCCACGGGTTCAACAAGCAAATTCTGCCATCACTAGTGTCAGCAATGTTCAATATA
ATAATGAAACTTCTACTACAAAGGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAGTCAGCC
AACAATAGTCTTGGTGCTATCTTTGGAAATATTGAATCATCTGACGAACTAGCCGTTGCTGGGGAGGGATCTGGTGTTAT
CTACAAAAAAGATGGTCAATATGCCTATATTGTGACAAATACGCATGTTATTAATAACGCAGAAAAGATTGATATCCTTT
TAGCATCTGGAGAAAAAATTAGCGGTGAACTTGTTGGTTCTGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGCGTCTACGCCAATACAGTTACCCAGGGTATTATTTCTAGCTTAAGTCGGACAGTTACTTCACAATCAAAAG
ATGGACAAACAATCTCAACTAACGCTATTCAAACTGATACAGCTATCAACCCTGGAAACTCTGGCGGACCGTTAATCAAT
ACCCAAGGACAAGTGATAGGCATTACCTCTAGCAAAATTACCTCAAGTTCTGCAAATAGCTCAGGCGTGGCTGTAGAAGG
GTTGGGATTTGCTATTCCTGCAAATGATGCCGTAGCTATTATCAATCAGCTTGAAAAAACTGGACAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTAGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTAGTAATTGTCTCTACACAAAGTGGGCTACCTGCAGATGGAAAATTAGAAACTTTTGATGTTATTACTGA
GATTGACGGAGAAGCTATTCAAAATAAGAGTGACCTCCAGAGCGCTCTCTACAAACATCAAATTGGAGATACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGCGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G7SHV4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.446

99.749

0.593

  htrA Streptococcus gordonii str. Challis substr. CH1

59.494

99.246

0.59

  htrA Streptococcus pneumoniae D39

57.252

98.744

0.565

  htrA Streptococcus pneumoniae TIGR4

57.252

98.744

0.565

  htrA Streptococcus mitis NCTC 12261

57.252

98.744

0.565

  htrA Streptococcus pneumoniae R6

57.252

98.744

0.565

  htrA Streptococcus pneumoniae Rx1

57.252

98.744

0.565