Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   OSR41_RS14800 Genome accession   NZ_CP116941
Coordinates   2848391..2849065 (-) Length   224 a.a.
NCBI ID   WP_003184045.1    Uniprot ID   Q65GL3
Organism   Bacillus licheniformis strain GN02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2843391..2854065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSR41_RS14765 (OSR41_14765) - 2843499..2843930 (+) 432 WP_369878943.1 SRPBCC family protein -
  OSR41_RS14770 (OSR41_14770) - 2843930..2844250 (+) 321 WP_003184034.1 ArsR/SmtB family transcription factor -
  OSR41_RS14775 (OSR41_14775) minD 2844295..2845101 (-) 807 WP_003184035.1 septum site-determining protein MinD -
  OSR41_RS14780 (OSR41_14780) minC 2845104..2845784 (-) 681 WP_011198163.1 septum site-determining protein MinC -
  OSR41_RS14785 (OSR41_14785) mreD 2845839..2846357 (-) 519 WP_003184039.1 rod shape-determining protein MreD -
  OSR41_RS14790 (OSR41_14790) mreC 2846354..2847262 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  OSR41_RS14795 (OSR41_14795) - 2847293..2848303 (-) 1011 WP_003184042.1 rod shape-determining protein -
  OSR41_RS14800 (OSR41_14800) ysxA/radC 2848391..2849065 (-) 675 WP_003184045.1 RadC family protein Machinery gene
  OSR41_RS14805 (OSR41_14805) - 2849120..2849692 (-) 573 WP_003184048.1 Maf family protein -
  OSR41_RS14810 (OSR41_14810) - 2849846..2850877 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  OSR41_RS14815 (OSR41_14815) comC 2851081..2851830 (-) 750 WP_003184052.1 prepilin peptidase Machinery gene
  OSR41_RS14820 (OSR41_14820) - 2851973..2853271 (-) 1299 WP_309149026.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25239.11 Da        Isoelectric Point: 8.3107

>NTDB_id=714982 OSR41_RS14800 WP_003184045.1 2848391..2849065(-) (ysxA/radC) [Bacillus licheniformis strain GN02]
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=714982 OSR41_RS14800 WP_003184045.1 2848391..2849065(-) (ysxA/radC) [Bacillus licheniformis strain GN02]
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

80.804

100

0.808
  radC Streptococcus pneumoniae TIGR4

46.667

93.75

0.438
  radC Streptococcus pneumoniae R6

46.19

93.75

0.433
  radC Streptococcus pneumoniae D39

46.19

93.75

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

44.762

93.75

0.42