Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   NQZ90_RS00325 Genome accession   NZ_CP102148
Coordinates   56046..56945 (+) Length   299 a.a.
NCBI ID   WP_044668723.1    Uniprot ID   A0A0Z8JVH6
Organism   Streptococcus suis strain DNC15     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 51046..61945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS00300 (NQZ90_00300) - 51657..52385 (+) 729 WP_203200676.1 amino acid transporter -
  NQZ90_RS00305 (NQZ90_00305) - 52411..53283 (+) 873 WP_044685500.1 ABC transporter ATP-binding protein -
  NQZ90_RS00310 (NQZ90_00310) ruvB 53569..54570 (+) 1002 WP_014637277.1 Holliday junction branch migration DNA helicase RuvB -
  NQZ90_RS00315 (NQZ90_00315) - 54570..55316 (+) 747 WP_044668725.1 GNAT family N-acetyltransferase -
  NQZ90_RS00320 (NQZ90_00320) - 55318..55941 (+) 624 WP_014637278.1 HAD-IA family hydrolase -
  NQZ90_RS00325 (NQZ90_00325) comR 56046..56945 (+) 900 WP_044668723.1 helix-turn-helix domain-containing protein Regulator
  NQZ90_RS00330 (NQZ90_00330) - 57154..58374 (+) 1221 WP_257110264.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NQZ90_RS00335 (NQZ90_00335) - 58565..60088 (+) 1524 WP_257110265.1 quinol oxidase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35178.03 Da        Isoelectric Point: 4.5398

>NTDB_id=714976 NQZ90_RS00325 WP_044668723.1 56046..56945(+) (comR) [Streptococcus suis strain DNC15]
MNDKEFGQRVRQLRETASLTREQFCDDELELSVRQLTRIEAGTSKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEELVEKRDAIMTEIYDDYYDDLPEEEKIAIDSIQSRIDTLESGTAGFGKEILEDYFEQIFRKQKYEVND
LLIIRLQLEYVRLSSSDSEIFGQFLKIIEYLHGQIDIINSSDLFVLRDTLLSCVNILGSKKYYEPIPKIFDSVDKIIQST
QDFQKKPIVSVLKWKYALFVNKDRGEAEKHYLDAMLFAKLIENRELEQKIEEDWKVDNQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=714976 NQZ90_RS00325 WP_044668723.1 56046..56945(+) (comR) [Streptococcus suis strain DNC15]
ATGAACGATAAGGAATTTGGACAACGTGTACGTCAACTTCGAGAAACCGCTAGTCTGACACGTGAACAGTTTTGCGATGA
CGAACTTGAGCTCTCCGTCCGCCAATTAACCCGTATCGAAGCAGGTACTTCTAAGCCGACTTTTTCAAAAATCCAATATA
TCGCAACCCGCTTAGGCATGGGGCTCTATGAGCTTATGCCTGATTATGTATCCTTGCCAGAAAGATACTCCAAGCTGAAA
TTTGATGTCCTCCGTACACCGACTTATGGTAATGAGGAATTAGTTGAAAAACGTGATGCTATCATGACGGAAATCTATGA
TGATTACTACGACGACTTGCCTGAGGAGGAGAAAATAGCGATTGATTCCATTCAATCCCGAATTGATACCTTAGAGTCAG
GGACAGCAGGCTTTGGAAAAGAGATACTGGAAGATTACTTTGAACAAATTTTCCGAAAACAAAAGTACGAAGTGAATGAT
TTGCTGATTATTAGGCTCCAGCTTGAATACGTTAGATTGTCCAGTAGTGACTCAGAAATATTTGGACAGTTTTTGAAAAT
TATAGAATATTTACATGGACAAATTGATATTATCAATTCAAGTGATTTATTTGTTCTAAGAGATACATTGTTATCTTGTG
TAAACATTTTGGGAAGTAAAAAATATTACGAACCAATACCAAAGATATTCGACAGTGTAGATAAAATTATACAGTCAACG
CAAGATTTTCAGAAAAAGCCAATTGTCAGTGTGTTGAAATGGAAGTATGCACTTTTTGTAAATAAGGATAGAGGTGAGGC
TGAAAAGCATTATCTAGATGCGATGCTATTTGCAAAATTGATAGAAAATAGAGAGTTAGAGCAGAAGATTGAAGAAGATT
GGAAAGTTGACAATCAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_31)

(5-60)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JVH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

92.642

100

0.926
  comR Streptococcus suis 05ZYH33

92.642

100

0.926
  comR Streptococcus suis D9

59.801

100

0.602
  comR Streptococcus mutans UA159

45.151

100

0.452
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.801

97.324

0.368
  comR Streptococcus pyogenes MGAS315

37.037

99.331

0.368