NTDB

Overview

Name	micA	Type	Regulator
Locus tag	NQZ96_RS06260	Genome accession	NZ_CP102137
Coordinates	1280245..1280949 (-)	Length	234 a.a.
NCBI ID	WP_004298854.1	Uniprot ID	A0A0K2E6P6
Organism	Streptococcus suis strain M104300_S20
Function	repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1275245..1285949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ96_RS06235 (NQZ96_06235)	-	1276124..1276873 (-)	750	WP_012027298.1	ATP-binding cassette domain-containing protein	-
NQZ96_RS06240 (NQZ96_06240)	-	1277036..1277578 (-)	543	WP_257125800.1	ATP-binding cassette domain-containing protein	-
NQZ96_RS06245 (NQZ96_06245)	-	1277565..1277837 (-)	273	WP_079849557.1	hypothetical protein	-
NQZ96_RS06250 (NQZ96_06250)	vicX	1278093..1278896 (-)	804	WP_012027300.1	MBL fold metallo-hydrolase	Regulator
NQZ96_RS06255 (NQZ96_06255)	micB	1278903..1280252 (-)	1350	WP_012027301.1	cell wall metabolism sensor histidine kinase VicK	Regulator
NQZ96_RS06260 (NQZ96_06260)	micA	1280245..1280949 (-)	705	WP_004298854.1	response regulator YycF	Regulator
NQZ96_RS06265 (NQZ96_06265)	-	1281143..1281904 (+)	762	WP_257125801.1	amino acid ABC transporter ATP-binding protein	-
NQZ96_RS06270 (NQZ96_06270)	-	1281915..1282754 (+)	840	WP_012027305.1	transporter substrate-binding domain-containing protein	-
NQZ96_RS06275 (NQZ96_06275)	-	1282769..1283467 (+)	699	WP_012028333.1	amino acid ABC transporter permease	-
NQZ96_RS06280 (NQZ96_06280)	-	1283482..1284141 (+)	660	WP_002935828.1	amino acid ABC transporter permease	-

Sequence

Protein

Download Length: 234 a.a. Molecular weight: 26781.77 Da Isoelectric Point: 4.8957

                                >NTDB_id=714693 NQZ96_RS06260 WP_004298854.1 1280245..1280949(-) (micA) [Streptococcus suis strain M104300_S20]

MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSA

KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELT

HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGND

Nucleotide

Download Length: 705 bp

                                >NTDB_id=714693 NQZ96_RS06260 WP_004298854.1 1280245..1280949(-) (micA) [Streptococcus suis strain M104300_S20]

ATGAAAAAAATATTAATTGTAGATGATGAAAAACCAATCTCAGATATTATTAAGTTTAATATGACGCGTGAGGGATATGA

AGTTGTGACAGCTTTCGATGGACGTGAAGCCTTGGAAGTATTTGAGGCTGAGTTTCCTGACATTGTCATTTTGGACTTGA

TGTTGCCAGAATTGGACGGACTAGAGGTTGCTCGAACGATTCGTAAGACCAGCAATGTTCCAATCTTGATGTTATCTGCT

AAAGATAGCGAATTTGATAAGGTTATCGGGCTTGAAATAGGGGCGGATGATTATGTGACCAAGCCCTTCTCTAATCGCGA

ATTACAGGCGCGTGTTAAGGCTCTTCTTCGTCGTAGTGAATTGGCAGAGACGCAGACAAATATTGAGTCAACAGGAACTC

CAGAGTTGGTGATTGGCGATTTGGTCATTCTGCCTGATGCGTTTGTTGCTAAGAAGCATGGTAAAGAGCTGGAGCTGACC

CATCGTGAGTTTGAATTGCTCCACCATCTGGCCAAACACTTAGGTCAGGTTATGACTCGAGAACATCTATTGGAAACAGT

TTGGGGTTATGATTACTTTGGTGATGTCCGCACGGTGGATGTAACGATTCGTCGTCTGCGTGAGAAAATTGAAGATACAC

CAAGCAGACCAGAATACATTCTTACTCGTCGCGGAGTGGGATATTTTATAAAAGGAAATGATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(4-112)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0K2E6P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
micA	Streptococcus pneumoniae Cp1015	81.974	99.573	0.816
vicR	Streptococcus mutans UA159	80.426	100	0.808
covR	Lactococcus lactis subsp. lactis strain DGCC12653	44.783	98.291	0.44
covR	Streptococcus salivarius strain HSISS4	43.723	98.718	0.432
scnR	Streptococcus mutans UA159	38.095	98.718	0.376

Detailed information NTG0714693