Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NQZ98_RS06435 Genome accession   NZ_CP102135
Coordinates   1267676..1268617 (-) Length   313 a.a.
NCBI ID   WP_024400032.1    Uniprot ID   A0A9Q5BYG1
Organism   Streptococcus suis strain M106471_S40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1262676..1273617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS06410 (NQZ98_06410) prsA 1262781..1263782 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  NQZ98_RS06415 (NQZ98_06415) - 1263843..1264562 (-) 720 WP_050571574.1 O-methyltransferase -
  NQZ98_RS06420 (NQZ98_06420) - 1264637..1265185 (-) 549 WP_002938103.1 DUF6630 family protein -
  NQZ98_RS06425 (NQZ98_06425) - 1265201..1265641 (-) 441 WP_024400030.1 hypothetical protein -
  NQZ98_RS06430 (NQZ98_06430) pepF 1265643..1267445 (-) 1803 WP_024400031.1 oligoendopeptidase F Regulator
  NQZ98_RS06435 (NQZ98_06435) coiA 1267676..1268617 (-) 942 WP_024400032.1 competence protein CoiA Machinery gene
  NQZ98_RS06440 (NQZ98_06440) metG 1268681..1270684 (-) 2004 WP_024400033.1 methionine--tRNA ligase -
  NQZ98_RS06445 (NQZ98_06445) - 1270840..1271433 (+) 594 WP_024400034.1 DUF1361 domain-containing protein -
  NQZ98_RS06450 (NQZ98_06450) - 1271733..1272770 (+) 1038 WP_024400035.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36378.15 Da        Isoelectric Point: 8.0001

>NTDB_id=714586 NQZ98_RS06435 WP_024400032.1 1267676..1268617(-) (coiA) [Streptococcus suis strain M106471_S40]
MLVALDEDGQVFNVLENPAPQGRFCCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNDRLALEVQCSSLPISRLQVRTQAYHEAGLQVLWLLGKCLWLKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKIFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIARQLYYRTPNWL
ALQAEAYGRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=714586 NQZ98_RS06435 WP_024400032.1 1267676..1268617(-) (coiA) [Streptococcus suis strain M106471_S40]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTTTTGCTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACGTAACCCTGCGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCCCTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATCGTTTAGCCTTGGAAGTACA
GTGTTCCAGTCTGCCCATTTCTCGGTTGCAGGTAAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAATGCCTATGGTTAAAAGAAAGATTAAGCAAATTACACAAGCAATTCCTCTCTTTTAGTATGAACATGGGGTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGATTTTTCCATTTGGTGAGGGAAATTTATTGGAAATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCGTCAGCTGTATTACAGAACTCCCAATTGGTTA
GCCCTACAGGCGGAAGCCTATGGTCGTGGTGAAAATCTACTAACCAAAACGGCAGAAGAATGGTATCCCCATATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.282

99.681

0.511
  coiA Streptococcus pneumoniae Rx1

51.282

99.681

0.511
  coiA Streptococcus pneumoniae D39

51.282

99.681

0.511
  coiA Streptococcus pneumoniae R6

51.282

99.681

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428