Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NQZ98_RS06430 Genome accession   NZ_CP102135
Coordinates   1265643..1267445 (-) Length   600 a.a.
NCBI ID   WP_024400031.1    Uniprot ID   A0A9Q5BV71
Organism   Streptococcus suis strain M106471_S40     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260643..1272445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS06405 (NQZ98_06405) - 1262028..1262513 (-) 486 WP_024400028.1 LURP-one-related/scramblase family protein -
  NQZ98_RS06410 (NQZ98_06410) prsA 1262781..1263782 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  NQZ98_RS06415 (NQZ98_06415) - 1263843..1264562 (-) 720 WP_050571574.1 O-methyltransferase -
  NQZ98_RS06420 (NQZ98_06420) - 1264637..1265185 (-) 549 WP_002938103.1 DUF6630 family protein -
  NQZ98_RS06425 (NQZ98_06425) - 1265201..1265641 (-) 441 WP_024400030.1 hypothetical protein -
  NQZ98_RS06430 (NQZ98_06430) pepF 1265643..1267445 (-) 1803 WP_024400031.1 oligoendopeptidase F Regulator
  NQZ98_RS06435 (NQZ98_06435) coiA 1267676..1268617 (-) 942 WP_024400032.1 competence protein CoiA Machinery gene
  NQZ98_RS06440 (NQZ98_06440) metG 1268681..1270684 (-) 2004 WP_024400033.1 methionine--tRNA ligase -
  NQZ98_RS06445 (NQZ98_06445) - 1270840..1271433 (+) 594 WP_024400034.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69188.37 Da        Isoelectric Point: 4.5489

>NTDB_id=714585 NQZ98_RS06430 WP_024400031.1 1265643..1267445(-) (pepF) [Streptococcus suis strain M106471_S40]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIENLYVYASMKND
QDTREGKYQEFQAKAMGLYSIFSQAFAFYEPEFMAITEEQLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=714585 NQZ98_RS06430 WP_024400031.1 1265643..1267445(-) (pepF) [Streptococcus suis strain M106471_S40]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTCGACTCAGCGAAGAGCC
TTTTGACGATTAGCGAGACTCAGCTTGGTCTGATGCGTCGCATTGAAAATCTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGACACTCGCGAGGGAAAATACCAGGAATTTCAAGCTAAAGCAATGGGCTTGTATTCGATCTTTTCACAAGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAATTGGAAGCCTTTAAAGTAGAAGAGCCGGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCAGCTAAGGACCACGTCTTGTCACAAGAGGTGGAAGAAGTATTAGCAGCGACC
AGCGAAATTTTCGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGTCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTGCCCCTTTCACACGGTAACTACATTCACTTTATGGAGTCTAAAAACCGCGACGTCCGCCAAGAAG
CCTATGAGGCCATGTATGGAACCTACGAGCAGTTCCAGCATACCTACGCTAAGACCCTTCAGTCTAATGTCAAGGTAAAT
AACCTGAAAGCTCGTTTGCGTAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCCTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACAGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697