Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NQU90_RS20485 Genome accession   NZ_CP102108
Coordinates   4433781..4435295 (+) Length   504 a.a.
NCBI ID   WP_058058954.1    Uniprot ID   -
Organism   Aeromonas veronii strain GD21SC2322TT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4428781..4440295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU90_RS20470 (NQU90_20470) - 4430518..4431462 (-) 945 WP_257123954.1 branched-chain amino acid transaminase -
  NQU90_RS20475 (NQU90_20475) ilvM 4431475..4431753 (-) 279 WP_257123956.1 acetolactate synthase 2 small subunit -
  NQU90_RS20480 (NQU90_20480) ilvG 4431750..4433396 (-) 1647 WP_257123957.1 acetolactate synthase 2 catalytic subunit -
  NQU90_RS20485 (NQU90_20485) comM 4433781..4435295 (+) 1515 WP_058058954.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NQU90_RS20490 (NQU90_20490) - 4435423..4436322 (+) 900 WP_139428766.1 acyltransferase -
  NQU90_RS20495 (NQU90_20495) - 4436329..4437294 (+) 966 WP_257123958.1 acyltransferase -
  NQU90_RS20500 (NQU90_20500) - 4437219..4437725 (-) 507 WP_257123959.1 DUF523 domain-containing protein -
  NQU90_RS20505 (NQU90_20505) - 4437722..4438372 (-) 651 WP_257123960.1 DNA mismatch repair protein MutT -
  NQU90_RS20510 (NQU90_20510) - 4438447..4439082 (+) 636 WP_005356142.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54548.46 Da        Isoelectric Point: 7.6884

>NTDB_id=714468 NQU90_RS20485 WP_058058954.1 4433781..4435295(+) (comM) [Aeromonas veronii strain GD21SC2322TT]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRGRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=714468 NQU90_RS20485 WP_058058954.1 4433781..4435295(+) (comM) [Aeromonas veronii strain GD21SC2322TT]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTACCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAAAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTGGCGAGCCGCCTTCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGTGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGACCCGGCGAAATATCGCTGGCCC
ACAACGGAGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATTAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGATGGCCAAACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGGTCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATTTTGCGGGTGTCGCGTACCATCGCCGATCTGGCCGGACAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTACAGGGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464