Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NQU59_RS02470 Genome accession   NZ_CP102099
Coordinates   525909..527036 (+) Length   375 a.a.
NCBI ID   WP_005240378.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 520909..532036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS02450 (NQU59_02450) - 521452..523572 (-) 2121 WP_257064841.1 TonB-dependent copper receptor -
  NQU59_RS02455 (NQU59_02455) - 523645..524082 (-) 438 WP_257064842.1 DUF2946 family protein -
  NQU59_RS02460 (NQU59_02460) def 524094..524624 (-) 531 WP_004656477.1 peptide deformylase -
  NQU59_RS02465 (NQU59_02465) tsaP 524747..525898 (+) 1152 WP_005240377.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NQU59_RS02470 (NQU59_02470) dprA 525909..527036 (+) 1128 WP_005240378.1 DNA-processing protein DprA Machinery gene
  NQU59_RS02475 (NQU59_02475) - 527072..527641 (+) 570 WP_257064843.1 Sua5/YciO/YrdC/YwlC family protein -
  NQU59_RS02480 (NQU59_02480) - 528058..528975 (-) 918 WP_257064844.1 ABC transporter permease -
  NQU59_RS02485 (NQU59_02485) - 528985..530091 (-) 1107 WP_257064846.1 ABC transporter permease -
  NQU59_RS02490 (NQU59_02490) - 530120..531727 (-) 1608 WP_373462963.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 41777.50 Da        Isoelectric Point: 7.0944

>NTDB_id=714386 NQU59_RS02470 WP_005240378.1 525909..527036(+) (dprA) [Acinetobacter colistiniresistens strain C-214]
MLNQLSPHHYHTVLVWYLVQHSLSSFAKLQQHFGNCEQATQPHRFSEWSQLGLHANHLKRLAEFQSPQGQQQFKQLLDQV
CKHSDFILTPEDLGYPTQLQPYADRPPILFGQGQAQALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAQG
IDQAAHQGALAHQRTIAVTGTGLDSVYPAQHKQLAQQITQSGAVITEFLPSTLPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAANQGKMVFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWQTQQQTVEAINSPPSLPTHL
IALYQSLDWVGQDIDQLAQRHPITTAALTAQLMELELLGLCLQQAGRYLRCRPMH

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=714386 NQU59_RS02470 WP_005240378.1 525909..527036(+) (dprA) [Acinetobacter colistiniresistens strain C-214]
ATGTTGAATCAACTATCACCACATCACTATCACACTGTGCTGGTGTGGTATTTGGTTCAACATTCACTCTCCAGTTTTGC
CAAGCTTCAACAACATTTTGGTAATTGTGAACAAGCCACACAGCCACACCGTTTCTCTGAATGGTCACAACTGGGCTTAC
ACGCCAATCACTTAAAACGTTTGGCGGAATTTCAAAGTCCTCAGGGTCAACAACAATTTAAACAGTTGCTTGATCAGGTG
TGTAAACATAGTGATTTTATCCTGACTCCTGAAGATCTGGGCTATCCGACCCAATTACAGCCTTATGCAGACCGCCCCCC
GATTTTATTTGGACAAGGTCAGGCACAAGCCTTATTACAACCGCAAATTGCCATGGTCGGTAGTCGTAAACCGAGTCCTC
ATGGACGACAAGTTGCTTATGATTTTGCCTATTATCTTAGTGAAAAAGGCTTCTATATCAGCAGTGGTTTGGCGCAGGGT
ATTGATCAAGCCGCGCATCAAGGAGCTTTAGCTCATCAACGCACCATTGCCGTGACGGGCACTGGTTTAGATAGCGTTTA
CCCTGCTCAGCACAAGCAATTGGCACAACAAATTACCCAATCAGGTGCTGTCATCACTGAGTTTTTACCCTCCACCCTGC
CATTGCAACAGCATTTCCCAAGACGTAATCGAATTGTCAGTGGTTTGAGTCTGGGGGTATTGGTGGTCGAAGCTGCGCTG
AAAAGCGGCTCTCTCATCACAGCGAATGAAGCAGCCAATCAAGGCAAAATGGTCTTTGCGATTCCTGGACATATTTACAG
TGAGCATCATCAAGGTTGTCATCAACTGATTCGGGAAGGTGCGATTCTGGTCGACCATCCCGAGCAAATCATTGAAGATT
TAGCCTTGCCAACGCAATGGCAAACGCAACAACAAACCGTGGAAGCCATCAACTCTCCACCTAGCCTGCCAACCCATTTG
ATTGCGTTGTATCAAAGTCTAGACTGGGTCGGACAAGATATAGATCAACTGGCACAGCGCCATCCAATCACGACTGCAGC
ACTCACCGCTCAATTGATGGAGCTGGAATTACTCGGTTTATGCCTGCAACAAGCAGGCCGCTATTTACGTTGCCGCCCAA
TGCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

76.8

100

0.768

  dprA Acinetobacter baumannii strain A118

76.267

100

0.763

  dprA Acinetobacter baylyi ADP1

69.737

100

0.707

  dprA Vibrio cholerae strain A1552

43.373

88.533

0.384