Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   NQU59_RS02190 Genome accession   NZ_CP102099
Coordinates   462670..464157 (+) Length   495 a.a.
NCBI ID   WP_257064794.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 457670..469157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS02165 (NQU59_02165) ribD 458581..459681 (-) 1101 WP_257064788.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  NQU59_RS02170 (NQU59_02170) nrdR 459694..460158 (-) 465 WP_004656377.1 transcriptional regulator NrdR -
  NQU59_RS02175 (NQU59_02175) - 460284..461693 (-) 1410 WP_005240248.1 ammonium transporter -
  NQU59_RS02180 (NQU59_02180) glnK 461761..462099 (-) 339 WP_004656379.1 P-II family nitrogen regulator -
  NQU59_RS02185 (NQU59_02185) - 462374..462601 (+) 228 WP_005240251.1 accessory factor UbiK family protein -
  NQU59_RS02190 (NQU59_02190) comM 462670..464157 (+) 1488 WP_257064794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NQU59_RS02195 (NQU59_02195) - 464200..464988 (-) 789 WP_257064797.1 TorF family putative porin -
  NQU59_RS02200 (NQU59_02200) - 465370..466134 (+) 765 WP_257064799.1 TSUP family transporter -
  NQU59_RS02205 (NQU59_02205) - 466243..467055 (-) 813 WP_005240296.1 TorF family putative porin -
  NQU59_RS02210 (NQU59_02210) - 467792..469066 (+) 1275 WP_005240298.1 OprD family outer membrane porin -

Sequence


Protein


Download         Length: 495 a.a.        Molecular weight: 54431.13 Da        Isoelectric Point: 7.9980

>NTDB_id=714384 NQU59_RS02190 WP_257064794.1 462670..464157(+) (comM) [Acinetobacter colistiniresistens strain C-214]
MSFAKIYTRGLLGLHAPQIEVEVHISAGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENSTQNFEFIGELALDGHLRPISGALTIAMACQQAQHRLLLPAENLDEANQLPEFEVYAAKHL
QEVCAHFLGNPQIQAAPQRINTTSSTYQFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNT
RENLEVASIYSVANAPHHFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQTTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPDSIQRYQNRISGPLLDRIDLHIDVPPLQAQELQNRAPTE
NSATVRQRVINAYEKQLQRQQCLNQALSPKRLEQHALLDDSSSKILEMAQQRLNLSARAYHRILRVARTIADLAENEVIN
SNHISEALSYRGHQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=714384 NQU59_RS02190 WP_257064794.1 462670..464157(+) (comM) [Acinetobacter colistiniresistens strain C-214]
ATGTCTTTTGCCAAGATTTATACCAGAGGCCTATTGGGGCTACATGCCCCACAAATCGAAGTTGAAGTGCATATCAGTGC
AGGCTTGCCTTCTTTAACGATTGTCGGCCTGCCTGAAGCCGCAGTCCGTGAAAGTAAAGATCGTGTCCGCTCCGCCATCA
TTAATAGCGGTTTTCAGTTTCCAACCAAGCGTTTAACCATCAATTTAGCGCCTGCAGATTTACCCAAAGATGGTTCCCGG
CTCGATTTACCCATTGCACTCGGCATCTTGATTGCCTCTGGTCAACTCCCAGAAAACAGTACTCAAAACTTTGAATTTAT
TGGTGAACTGGCTCTTGATGGACATTTACGTCCTATTTCAGGTGCTTTAACTATTGCCATGGCCTGTCAACAGGCCCAGC
ATCGTCTCTTGCTACCAGCTGAAAATTTAGATGAAGCCAATCAACTTCCTGAATTTGAGGTCTACGCGGCCAAGCATCTC
CAAGAGGTTTGTGCACATTTTTTGGGCAACCCCCAGATTCAAGCTGCACCACAAAGAATAAATACCACGTCTTCTACTTA
CCAATTTGATCTGGCCGATGTTAAAGGTCAACTCCGTCCACGTCGTGCCTTGGAAATTGCAGCGGCTGGTGGACATTCAT
TACTGTTTAAAGGACCTCCAGGCACTGGAAAAACACTGTTAGCTTCACGGCTGCCATCAATTTTACCGCCGCTGAATACA
CGTGAAAATTTAGAAGTTGCGAGCATTTATTCAGTTGCCAATGCTCCGCATCATTTTGGACAGCGTCCATTCCGAGCACC
ACACCATACCGCATCCGCTATTGCCTTGGTCGGTGGAGGCTCACAACCCAAACCAGGTGAAATCACCTTGGCGCATTTGG
GTGTTCTATTCTTGGATGAATTACCCGAGTTTGACCGTAAAGTTCTGGAAGTGCTACGCCAGCCGCTCGAATCCAAAGAG
ATCGTGATTTCACGGGCAGCACGACAAACGACTTTTCCTGCAAACTTTCAATTTATTGCTGCAATGAATCCTTGCCCTTG
TGGCTATGCCTTTAATCAGGATAGTCGCTGCCAATGTTCGCCAGACAGTATTCAACGTTATCAAAACCGAATTTCAGGTC
CTTTATTGGATCGTATTGATTTACATATTGATGTACCGCCTTTACAGGCACAAGAATTACAGAATCGCGCGCCAACTGAA
AACTCAGCCACAGTACGGCAGCGTGTGATTAACGCCTATGAAAAACAGCTGCAACGCCAGCAATGTTTAAATCAGGCACT
TTCACCGAAGCGATTAGAACAACATGCTCTATTGGATGACAGTTCGAGTAAGATTCTTGAAATGGCTCAGCAACGTTTGA
ATCTGTCTGCACGTGCTTACCACCGCATATTAAGAGTTGCGCGAACCATTGCGGATCTAGCTGAAAATGAAGTGATCAAT
AGCAACCACATTAGCGAAGCACTGTCTTATCGTGGACATCAAAGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.209

100

0.525

  comM Glaesserella parasuis strain SC1401

50.8

100

0.513

  comM Vibrio campbellii strain DS40M4

50.707

100

0.507

  comM Haemophilus influenzae Rd KW20

49.699

100

0.501

  comM Legionella pneumophila str. Paris

48.992

100

0.491

  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

100

0.475