Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AFERRID_RS02255 Genome accession   NZ_AP018795
Coordinates   458714..459652 (+) Length   312 a.a.
NCBI ID   WP_226858175.1    Uniprot ID   A0A2Z6IF57
Organism   Acidithiobacillus ferridurans strain JCM 18981     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 453714..464652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFERRID_RS02225 (AFERRID_04430) - 453832..454224 (-) 393 WP_113526521.1 SCP2 sterol-binding domain-containing protein -
  AFERRID_RS02230 (AFERRID_04440) - 454335..455081 (-) 747 WP_113526520.1 ThiF family adenylyltransferase -
  AFERRID_RS02235 (AFERRID_04450) - 455081..455896 (-) 816 WP_113526519.1 TatD family hydrolase -
  AFERRID_RS02240 (AFERRID_04460) - 456026..457258 (+) 1233 WP_225981799.1 FAD-dependent monooxygenase -
  AFERRID_RS02245 (AFERRID_04470) - 457248..458435 (+) 1188 WP_126604286.1 FAD-dependent monooxygenase -
  AFERRID_RS02250 (AFERRID_04480) - 458447..458710 (+) 264 WP_113526517.1 accessory factor UbiK family protein -
  AFERRID_RS02255 (AFERRID_04490) comM 458714..459652 (+) 939 WP_226858175.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AFERRID_RS02260 (AFERRID_04500) - 459963..461102 (+) 1140 WP_126604287.1 tyrosine-type recombinase/integrase -
  AFERRID_RS02265 (AFERRID_04510) - 461099..461536 (+) 438 WP_126604288.1 helix-turn-helix transcriptional regulator -
  AFERRID_RS02270 (AFERRID_04520) - 461546..463354 (+) 1809 WP_126604289.1 hypothetical protein -
  AFERRID_RS02275 (AFERRID_04530) - 463341..463637 (+) 297 WP_126604290.1 GIY-YIG nuclease family protein -
  AFERRID_RS02280 (AFERRID_04540) - 463634..464446 (-) 813 WP_126604291.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 32410.21 Da        Isoelectric Point: 6.9248

>NTDB_id=71438 AFERRID_RS02255 WP_226858175.1 458714..459652(+) (comM) [Acidithiobacillus ferridurans strain JCM 18981]
MPLAIVHSRALTGIQAAGVAVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGFEFPARRMVVNLAPADLPKEGGR
FDLPMAIGILAASGQLPAAALEKLEMIGELALDGSLRPVTGTLSSALAAGQAGHAILVPQGNAREAAFAQSTPVFACANL
AQAAAHLRGTDRLPEVVCDAESLESALPYLDLRDVRGQESAKRALIVAAVGGHHLLLSGPPGTGKSMLAARLPGLLPPLH
RSEALEVAAIHSLQGDGFDIRQWGRRPFRSPHHSASSAALVGGGSHPRPGEISLAHHGILFLDEMPSLQYCQ

Nucleotide


Download         Length: 939 bp        

>NTDB_id=71438 AFERRID_RS02255 WP_226858175.1 458714..459652(+) (comM) [Acidithiobacillus ferridurans strain JCM 18981]
TTGCCGCTGGCGATAGTCCACAGCCGCGCCCTGACCGGGATACAGGCAGCAGGCGTCGCCGTGGAATGCGATCTGGGTCC
CGGCCTGCCAACCTTTGCCGTCGTCGGTCTCGCTGAAACGGCGGTCAAGGAAGCCCGGGACCGGGTGCGTTCCGCCATTC
AAAACAGCGGCTTCGAGTTTCCGGCACGACGGATGGTCGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAAGGTGGCCGC
TTCGATCTGCCCATGGCCATCGGTATTCTCGCCGCCAGCGGGCAACTTCCTGCGGCCGCACTGGAAAAGCTGGAGATGAT
CGGTGAACTGGCGCTGGACGGCAGCCTGCGTCCGGTGACGGGCACGCTCTCCAGCGCACTGGCGGCGGGACAGGCCGGAC
ACGCCATTCTGGTGCCGCAAGGCAATGCCCGGGAAGCCGCCTTTGCCCAAAGTACTCCGGTCTTTGCCTGCGCGAACCTG
GCACAGGCCGCCGCCCACCTGCGCGGTACGGATCGCCTACCTGAAGTCGTCTGCGATGCGGAAAGCCTCGAATCGGCCCT
TCCGTACCTCGATCTGCGCGATGTGCGTGGTCAGGAATCGGCCAAGCGGGCACTGATTGTTGCGGCGGTGGGTGGTCATC
ACCTACTCCTGTCGGGCCCGCCCGGCACCGGGAAAAGCATGCTGGCAGCACGACTACCCGGCCTGTTACCGCCCCTGCAC
CGCAGCGAGGCGCTGGAAGTAGCCGCCATCCACAGCCTGCAAGGGGACGGCTTCGATATCCGTCAGTGGGGCAGACGTCC
GTTCCGCAGCCCCCACCATAGTGCCTCTTCAGCGGCGCTGGTGGGCGGTGGTTCGCACCCTCGCCCCGGTGAAATCAGTC
TGGCACATCACGGCATTCTTTTCCTGGACGAAATGCCTTCCTTACAATATTGCCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-308)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6IF57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.693

99.038

0.542
  comM Vibrio campbellii strain DS40M4

53.571

98.718

0.529
  comM Glaesserella parasuis strain SC1401

52.412

99.679

0.522
  comM Haemophilus influenzae Rd KW20

51.923

100

0.519
  comM Legionella pneumophila str. Paris

50.314

100

0.513
  comM Legionella pneumophila strain ERS1305867

50.314

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.728

100

0.449

Multiple sequence alignment