Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NP165_RS01710 Genome accession   NZ_CP102096
Coordinates   340395..340928 (+) Length   177 a.a.
NCBI ID   WP_257084628.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 335395..345928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS01695 (NP165_01695) uvrA 335504..338326 (-) 2823 WP_257084626.1 excinuclease ABC subunit UvrA -
  NP165_RS01700 (NP165_01700) galU 338470..339342 (-) 873 WP_257084627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NP165_RS01705 (NP165_01705) qstR 339462..340109 (-) 648 WP_257085529.1 LuxR C-terminal-related transcriptional regulator Regulator
  NP165_RS01710 (NP165_01710) ssb 340395..340928 (+) 534 WP_257084628.1 single-stranded DNA-binding protein Machinery gene
  NP165_RS01715 (NP165_01715) csrD 341097..343106 (+) 2010 WP_257084629.1 RNase E specificity factor CsrD -
  NP165_RS01720 (NP165_01720) - 343111..344550 (+) 1440 WP_257084630.1 MSHA biogenesis protein MshI -
  NP165_RS01725 (NP165_01725) pilO 344550..345197 (+) 648 WP_257084631.1 type 4a pilus biogenesis protein PilO -
  NP165_RS01730 (NP165_01730) - 345190..345516 (+) 327 WP_257084632.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19646.69 Da        Isoelectric Point: 5.2358

>NTDB_id=714338 NP165_RS01710 WP_257084628.1 340395..340928(+) (ssb) [Vibrio japonicus strain JCM 31412]
MASRGVNKVIIMGNLGQDPEVKYTANGSAVANITVATSETWRDKASGEQREKTEWHRVVLFGKTAEIAGEYLRKGSQVYL
EGQLQTRKWQDQSGQDRYTTEVVVQWPAGQMQLLGGRAQGGAPAMGGQPQQQQGGWGQPQQPAQQQYNAPQQQKQAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=714338 NP165_RS01710 WP_257084628.1 340395..340928(+) (ssb) [Vibrio japonicus strain JCM 31412]
ATGGCTAGCCGTGGAGTAAATAAAGTCATCATTATGGGCAACCTTGGTCAAGATCCTGAGGTTAAGTACACTGCTAATGG
TAGCGCCGTGGCAAATATTACCGTTGCGACGTCTGAAACATGGCGTGATAAAGCATCAGGTGAGCAGCGCGAGAAAACAG
AATGGCACCGCGTTGTTTTATTTGGTAAGACGGCAGAGATTGCGGGTGAGTATCTTCGCAAGGGCTCTCAAGTTTACTTA
GAAGGTCAGCTTCAAACTCGTAAGTGGCAAGATCAAAGCGGTCAAGACCGTTACACGACAGAAGTTGTTGTTCAGTGGCC
AGCAGGTCAAATGCAACTGTTAGGTGGTCGAGCACAAGGTGGCGCTCCAGCAATGGGTGGTCAACCTCAGCAGCAACAAG
GTGGTTGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTATAATGCACCGCAGCAACAGAAGCAGGCTCCTCAACAGTCT
CAGCCTCAGTACAATGAGCCACCAATGGATTTTGATGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.095

100

0.78
  ssb Glaesserella parasuis strain SC1401

51.852

100

0.554
  ssb Neisseria meningitidis MC58

46.067

100

0.463
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.463