Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NP165_RS01705 Genome accession   NZ_CP102096
Coordinates   339462..340109 (-) Length   215 a.a.
NCBI ID   WP_257085529.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 334462..345109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS01695 (NP165_01695) uvrA 335504..338326 (-) 2823 WP_257084626.1 excinuclease ABC subunit UvrA -
  NP165_RS01700 (NP165_01700) galU 338470..339342 (-) 873 WP_257084627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NP165_RS01705 (NP165_01705) qstR 339462..340109 (-) 648 WP_257085529.1 LuxR C-terminal-related transcriptional regulator Regulator
  NP165_RS01710 (NP165_01710) ssb 340395..340928 (+) 534 WP_257084628.1 single-stranded DNA-binding protein Machinery gene
  NP165_RS01715 (NP165_01715) csrD 341097..343106 (+) 2010 WP_257084629.1 RNase E specificity factor CsrD -
  NP165_RS01720 (NP165_01720) - 343111..344550 (+) 1440 WP_257084630.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24896.82 Da        Isoelectric Point: 9.3043

>NTDB_id=714337 NP165_RS01705 WP_257085529.1 339462..340109(-) (qstR) [Vibrio japonicus strain JCM 31412]
MMKSNYMRTIHFLCENKTVHHPLVENIKKRLSLDIPYLEPEELMLALQRNKHRILMIDHRDYSQLSNQIRSLPLANKVFE
TIVINVDKRLTTDEILSFGHLKGLFYASDTLDDISKGCSEIINGENWLPRKVSAQLLYHYRTVVESQCAPATVNLTTREI
HILRSLMTGASNSQIAEDQFISEFTVKSHLYQIFKKLSVKNRVQASAWAKQHLMS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=714337 NP165_RS01705 WP_257085529.1 339462..340109(-) (qstR) [Vibrio japonicus strain JCM 31412]
ATCATGAAAAGTAACTATATGAGAACCATTCATTTTTTATGTGAGAATAAAACCGTTCACCATCCACTCGTGGAAAATAT
CAAGAAGCGTCTGAGTCTGGATATTCCTTACCTTGAACCTGAAGAGCTTATGTTGGCGCTGCAACGCAACAAACATCGTA
TATTAATGATAGACCATCGAGATTACTCCCAACTAAGCAACCAGATTCGCTCTCTTCCACTGGCAAATAAAGTATTCGAA
ACTATTGTTATTAATGTAGATAAAAGACTGACCACCGATGAAATACTGAGTTTCGGCCATCTGAAAGGGCTATTTTATGC
AAGTGATACGCTTGATGATATCAGTAAGGGATGCAGCGAAATCATAAACGGTGAAAACTGGCTACCAAGAAAAGTATCGG
CGCAACTGCTATACCACTATAGAACCGTTGTTGAAAGCCAGTGTGCACCAGCCACCGTCAACCTCACAACACGAGAGATC
CATATACTTCGAAGTTTGATGACAGGCGCGTCAAATAGCCAAATTGCAGAAGATCAGTTTATCAGCGAATTCACCGTAAA
ATCGCACCTATACCAGATATTCAAAAAACTAAGCGTAAAGAATCGTGTGCAAGCAAGTGCTTGGGCAAAACAGCATTTAA
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio cholerae strain A1552

53.738

99.535

0.535
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535