Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NP165_RS00110 Genome accession   NZ_CP102096
Coordinates   25480..27003 (+) Length   507 a.a.
NCBI ID   WP_257084381.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 20480..32003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS00095 (NP165_00095) ilvE 22113..23054 (-) 942 WP_257084378.1 branched-chain-amino-acid transaminase -
  NP165_RS00100 (NP165_00100) ilvM 23066..23350 (-) 285 WP_257084379.1 acetolactate synthase 2 small subunit -
  NP165_RS00105 (NP165_00105) ilvG 23352..24998 (-) 1647 WP_257084380.1 acetolactate synthase 2 catalytic subunit -
  NP165_RS00110 (NP165_00110) comM 25480..27003 (+) 1524 WP_257084381.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NP165_RS00115 (NP165_00115) - 27234..28076 (+) 843 WP_257084382.1 DUF3100 domain-containing protein -
  NP165_RS00120 (NP165_00120) - 28069..28539 (+) 471 WP_257084383.1 hypothetical protein -
  NP165_RS00125 (NP165_00125) - 28597..29769 (+) 1173 WP_257084384.1 M20 aminoacylase family protein -
  NP165_RS00130 (NP165_00130) - 29791..30705 (+) 915 WP_257084385.1 LysR family transcriptional regulator -
  NP165_RS00135 (NP165_00135) - 30832..31803 (+) 972 WP_257084386.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55164.05 Da        Isoelectric Point: 8.5030

>NTDB_id=714328 NP165_RS00110 WP_257084381.1 25480..27003(+) (comM) [Vibrio japonicus strain JCM 31412]
MGLAIVHSRASVGVEAPNVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQLPVTELNDKEFVGELALSGELRTVKGVLPAALAANRDKRSLVVPHQNGDQAALVGKATHKSAQSL
LEVCADLCGQQSLSLHQTSNRIQPASNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMND
EEAMETASVASLTQQEININNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSIEIPSLPKGTLAEGGDR
GEPTSVVRDRVLEARARMEHRAKKSNALLGSREIEKHCPLQKQDAQFLESALHQLGLSIRAYHRIIKVARTIADLEGKSH
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=714328 NP165_RS00110 WP_257084381.1 25480..27003(+) (comM) [Vibrio japonicus strain JCM 31412]
ATGGGATTAGCAATTGTTCATAGTCGAGCTTCGGTTGGTGTTGAAGCACCCAATGTAACGGTTGAAGTGCATATTAGTAA
CGGAATGCCGGGGTTCACTCTAGTCGGTCTTCCCGAAACAACAGTTAAAGAGTCACGAGATCGGGTGCGTAGTGCGATCA
TTAACTCGCGTTTTGAATTTCCGGCCAAGCGAATTACCGTCAACTTAGCGCCAGCGGATTTACCCAAAGAAGGCGGTCGG
TTCGATTTACCTATTGCGCTGGGCATTTTGGCTGCTTCAGAACAGCTCCCAGTCACCGAGCTAAACGATAAAGAATTTGT
AGGGGAGTTGGCTTTATCCGGTGAGCTGCGAACGGTGAAAGGGGTGTTGCCCGCCGCGTTAGCCGCTAATCGAGACAAAC
GCTCTTTGGTTGTTCCTCACCAAAATGGTGATCAGGCGGCGCTGGTGGGGAAAGCGACGCACAAGTCAGCGCAGAGTCTA
CTCGAAGTGTGCGCTGATTTATGTGGGCAGCAATCTCTCAGCCTTCATCAGACGAGCAATCGAATTCAGCCAGCATCGAA
TGGCCGTGATCTTCAGGACATTATTGGTCAGCAGCAAGGTAAACGAGCGCTCGAAATCGCTGCCGCTGGCAATCACAACT
TGCTATTTCTGGGGCCTCCTGGGACGGGCAAAACGATGCTCGCGTCGAGACTGTGTGACTTGCTGCCTGAAATGAACGAT
GAAGAAGCGATGGAAACCGCTTCCGTTGCCTCGCTGACCCAACAGGAAATCAATATTAATAACTGGAAGCAGCGTCCGTT
TAGAGCACCTCACCACTCCAGCTCAATGGCGGCGCTAGTTGGTGGTGGCTCAATTCCTCGCCCTGGCGAGATCTCTTTAG
CGCATAACGGCCTATTATTTTTGGACGAAATGCCTGAATTTGAAAGAAAGGTACTTGATTCATTGCGAGAACCGCTAGAG
TCGGGAGAAATTATCATTTCTCGTGCACAAGGGAAAACCCGTTTTCCCGCTCGTTTCCAATTGGTGGGTGCGCTCAATCC
TAGCCCAACGGGTTATTATGAAGGCAACCAATCTCGCGTTAACCCACAAACCATATTGCGCTACTTGAGCCGCTTATCTG
GTCCATTACTCGATCGATTTGATATGTCGATTGAAATCCCATCGCTACCCAAAGGGACATTAGCCGAAGGTGGCGATCGG
GGAGAGCCAACGTCTGTTGTCAGAGATCGAGTGCTGGAAGCCAGAGCGAGAATGGAGCATCGGGCAAAGAAGTCCAATGC
GTTGTTGGGCAGCCGCGAGATAGAAAAGCATTGTCCTTTGCAAAAACAGGACGCTCAATTTTTAGAAAGTGCTTTGCACC
AATTAGGGTTATCGATTCGGGCCTATCACCGCATCATCAAAGTTGCTCGCACCATCGCTGATTTGGAAGGAAAAAGTCAT
ATAGAACGTTCCCATCTTGCCGAAGCATTAGGCTACCGCGCGATGGATCGGTTGTTGAAACAATTGACGGCACAAGCGGT
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.404

100

0.854
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.667

100

0.667
  comM Glaesserella parasuis strain SC1401

64.062

100

0.647
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.434