Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   NQZ84_RS08875 Genome accession   NZ_CP102094
Coordinates   1813295..1814017 (-) Length   240 a.a.
NCBI ID   WP_012775334.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808295..1819017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS08855 (NQZ84_08855) - 1808367..1809590 (-) 1224 WP_015647356.1 cysteine desulfurase -
  NQZ84_RS08860 (NQZ84_08860) sufD 1809594..1810856 (-) 1263 WP_257047525.1 Fe-S cluster assembly protein SufD -
  NQZ84_RS08865 (NQZ84_08865) sufC 1810873..1811646 (-) 774 WP_002938165.1 Fe-S cluster assembly ATPase SufC -
  NQZ84_RS08870 (NQZ84_08870) - 1812126..1813298 (-) 1173 WP_012027769.1 glycosyltransferase family 4 protein -
  NQZ84_RS08875 (NQZ84_08875) mecA 1813295..1814017 (-) 723 WP_012775334.1 adaptor protein MecA Regulator
  NQZ84_RS08880 (NQZ84_08880) - 1814145..1814981 (-) 837 WP_015647359.1 undecaprenyl-diphosphate phosphatase -
  NQZ84_RS08885 (NQZ84_08885) - 1815107..1816672 (+) 1566 WP_257047523.1 ABC transporter substrate-binding protein/permease -
  NQZ84_RS08890 (NQZ84_08890) - 1816665..1817408 (+) 744 WP_024401279.1 amino acid ABC transporter ATP-binding protein -
  NQZ84_RS08895 (NQZ84_08895) - 1817532..1817741 (-) 210 WP_009910800.1 hypothetical protein -
  NQZ84_RS08900 (NQZ84_08900) - 1817827..1818729 (-) 903 WP_002942264.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28000.54 Da        Isoelectric Point: 4.0497

>NTDB_id=714320 NQZ84_RS08875 WP_012775334.1 1813295..1814017(-) (mecA) [Streptococcus suis strain 12RC1]
MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDL
DQNLNFDEFTDLSELGDVASMTPDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPALQEHGTLMLPLAAIEELRKVPTV

Nucleotide


Download         Length: 723 bp        

>NTDB_id=714320 NQZ84_RS08875 WP_012775334.1 1813295..1814017(-) (mecA) [Streptococcus suis strain 12RC1]
ATGAAAGTAAAGCAAATTAGTGATTCAACCTTGAAAATCACTATAAAATTAGATGATTTGGAAGAGAGAGGAATGGAACT
TTCGGACTTTCTCATTCCGCAAGAAAAGACAGAGGAGTTCTTCTATACTGTTTTGGATGAATTGGATTTACCAATGACTT
TCCGAGAAAGCGGTATGCTGAGTTTTCGTGTGACTCCGAAGCCAGATCGAGTGGACATCTTTGTTACCAAATCTGATTTG
GATCAGAACTTGAATTTTGATGAATTTACAGATTTGTCGGAACTTGGTGATGTCGCAAGTATGACTCCAGATGAGTTTTT
CAAGAGTTTGGAGCAAACCGTTCGTGAGAAAAGCGCACCGGATGCAACAGCCGTTCGTCATTTGGAAGAGGTAGAGCAAG
AGGAAGAAGCAGATGAAGAGGAGCAGGAGCGCTATATTTACTATATTTTGGAATTTCCAACGATAGAGGATCTGTTTACT
TTTGTTGGTACGGTTGATTATCCAGTAGAAGAATCGGAATTATATAAAATGGATGGTCACTACTACTTGACTGTTCTTAT
CAATGTAGAAAATCGTTCCAAGCAGTATCCAGGCTACATTCTTTCAAGAATGTTGGAATTTACCAATGATACTAAGTTGA
CCAGACCTGCTTTACAAGAACACGGAACTTTGATGCTTCCGCTTGCGGCAATCGAGGAGCTTAGGAAGGTTCCGACAGTA
TGA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

52.049

100

0.529
  mecA Streptococcus pneumoniae D39

52.049

100

0.529
  mecA Streptococcus pneumoniae R6

52.049

100

0.529
  mecA Streptococcus pneumoniae TIGR4

52.049

100

0.529
  mecA Streptococcus mutans UA159

50.41

100

0.513
  mecA Streptococcus thermophilus LMD-9

47.5

100

0.475
  mecA Streptococcus thermophilus LMG 18311

47.083

100

0.471