Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J71_RS09545 Genome accession   NZ_AP018783
Coordinates   1920565..1920912 (-) Length   115 a.a.
NCBI ID   WP_005665977.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-3 isolate 15H03     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1915565..1925912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J71_RS09520 (CHBNV3_18430) otnI 1916033..1916809 (-) 777 WP_005647880.1 2-oxo-tetronate isomerase -
  K6J71_RS09525 (CHBNV3_18440) otnC 1916812..1917444 (-) 633 WP_005665968.1 3-oxo-tetronate 4-phosphate decarboxylase -
  K6J71_RS09530 (CHBNV3_18450) otnK 1917441..1918682 (-) 1242 WP_005665970.1 3-oxo-tetronate kinase -
  K6J71_RS09535 (CHBNV3_18460) ltnD 1918685..1919590 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  K6J71_RS09540 - 1919761..1920518 (+) 758 Protein_1841 DeoR family transcriptional regulator -
  K6J71_RS09545 (CHBNV3_18490) comE1/comEA 1920565..1920912 (-) 348 WP_005665977.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J71_RS09550 (CHBNV3_18500) ispH 1921081..1922025 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J71_RS09555 (CHBNV3_18510) lspA 1922022..1922537 (-) 516 WP_005651632.1 signal peptidase II -
  K6J71_RS09560 (CHBNV3_18520) - 1922607..1924166 (-) 1560 WP_020910143.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12337.15 Da        Isoelectric Point: 8.0085

>NTDB_id=71405 K6J71_RS09545 WP_005665977.1 1920565..1920912(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
MKLMKTLFTSVVLCSALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71405 K6J71_RS09545 WP_005665977.1 1920565..1920912(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTAGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

94.643

97.391

0.922
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

99.13

0.565
  comEA Vibrio cholerae C6706

42.727

95.652

0.409
  comEA Vibrio cholerae strain A1552

42.727

95.652

0.409
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment