Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   NQD70_RS01090 Genome accession   NZ_CP101991
Coordinates   188966..189394 (+) Length   142 a.a.
NCBI ID   WP_000793381.1    Uniprot ID   A0A8B4RCN7
Organism   Streptococcus agalactiae strain BCJB4361     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183966..194394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD70_RS01075 (NQD70_01075) - 186523..186888 (+) 366 WP_000285373.1 DUF1033 family protein -
  NQD70_RS01080 (NQD70_01080) comYA 187061..188032 (+) 972 WP_000250808.1 competence type IV pilus ATPase ComGA Machinery gene
  NQD70_RS01085 (NQD70_01085) comYB 187926..188969 (+) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQD70_RS01090 (NQD70_01090) comYD 188966..189394 (+) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQD70_RS01095 comGE 189366..189665 (+) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE -
  NQD70_RS01100 (NQD70_01105) - 189702..191156 (-) 1455 WP_001044789.1 recombinase family protein -
  NQD70_RS01105 (NQD70_01110) - 191314..191652 (-) 339 WP_000390807.1 hypothetical protein -
  NQD70_RS01110 (NQD70_01115) - 191656..192084 (-) 429 WP_000200806.1 hypothetical protein -
  NQD70_RS01115 (NQD70_01120) - 192096..192680 (-) 585 WP_000823130.1 hypothetical protein -
  NQD70_RS01120 (NQD70_01125) - 192683..192880 (-) 198 WP_000880826.1 hypothetical protein -
  NQD70_RS01125 (NQD70_01130) - 192899..193639 (-) 741 WP_000580170.1 helix-turn-helix transcriptional regulator -
  NQD70_RS01130 (NQD70_01135) - 193793..194014 (+) 222 WP_000215930.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16493.15 Da        Isoelectric Point: 10.0345

>NTDB_id=713732 NQD70_RS01090 WP_000793381.1 188966..189394(+) (comYD) [Streptococcus agalactiae strain BCJB4361]
MKNLLLKCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHN
YLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=713732 NQD70_RS01090 WP_000793381.1 188966..189394(+) (comYD) [Streptococcus agalactiae strain BCJB4361]
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAGAGCCTTATTGTATTATCAGT
AGTGGCATTTATGACGTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATAT
CCTTTGAACATCTTTATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAAT
TATCTCGAAAATACTTATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGC
TAATGGAGGGAATTCAAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTTACGTATCAATTATATATAGGAA
GTGGTAATTATCGTAAGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4RCN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

52.273

92.958

0.486
  comYD Streptococcus mutans UA159

52.273

92.958

0.486
  comYD Streptococcus gordonii str. Challis substr. CH1

43.662

100

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

41.045

94.366

0.387
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

89.437

0.387
  comGD/cglD Streptococcus mitis SK321

43.307

89.437

0.387
  comGD/cglD Streptococcus pneumoniae Rx1

42.52

89.437

0.38
  comGD/cglD Streptococcus pneumoniae D39

42.52

89.437

0.38
  comGD/cglD Streptococcus pneumoniae R6

42.52

89.437

0.38