Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   PPM34_RS00330 Genome accession   NZ_CP116869
Coordinates   60130..60360 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55130..65360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS00300 ridA 55295..55672 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  PPM34_RS00305 spoVG 55866..56159 (+) 294 WP_009966269.1 septation regulator SpoVG -
  PPM34_RS00310 glmU 56352..57722 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  PPM34_RS00315 prsS 57745..58698 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  PPM34_RS00320 rplYB 58783..59397 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  PPM34_RS00325 pth 59504..60070 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  PPM34_RS00330 subA/fin 60130..60360 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  PPM34_RS00335 mfd 60430..63963 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  PPM34_RS00340 spoVT 64099..64635 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=713622 PPM34_RS00330 WP_003243417.1 60130..60360(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain MGP001]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=713622 PPM34_RS00330 WP_003243417.1 60130..60360(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1