Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NPS16_RS00220 Genome accession   NZ_CP101986
Coordinates   30977..31558 (+) Length   193 a.a.
NCBI ID   WP_002264115.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 25977..36558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS00195 (NPS16_00195) - 26317..27285 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  NPS16_RS00200 (NPS16_00200) - 27374..28549 (+) 1176 WP_002264118.1 pyridoxal phosphate-dependent aminotransferase -
  NPS16_RS00205 (NPS16_00205) recO 28539..29294 (+) 756 WP_002271563.1 DNA repair protein RecO -
  NPS16_RS00210 (NPS16_00210) plsX 29502..30500 (+) 999 WP_002264116.1 phosphate acyltransferase PlsX -
  NPS16_RS00215 (NPS16_00215) - 30502..30750 (+) 249 WP_002263135.1 acyl carrier protein -
  NPS16_RS00220 (NPS16_00220) comA 30977..31558 (+) 582 WP_002264115.1 ATP-binding cassette domain-containing protein Regulator
  NPS16_RS00225 (NPS16_00225) purC 31680..32387 (+) 708 WP_002271562.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  NPS16_RS00230 (NPS16_00230) - 32397..36122 (+) 3726 WP_258969018.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21345.29 Da        Isoelectric Point: 4.7600

>NTDB_id=713622 NPS16_RS00220 WP_002264115.1 30977..31558(+) (comA) [Streptococcus mutans strain COCC33-14]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDDIKAMPLGFQTQISEDGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLDRTIIFIAHRGS
VSYYADRIVEIDSGEKIKDRINHRPFSFLMTTL

Nucleotide


Download         Length: 582 bp        

>NTDB_id=713622 NPS16_RS00220 WP_002264115.1 30977..31558(+) (comA) [Streptococcus mutans strain COCC33-14]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGCTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCCCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTGCTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACGATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGAAGACGGCGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAGCCTGTGTTGATTTTTGATGAGGCAACTAGCGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGGATCGCACGATTATTTTTATTGCTCACCGAGGCAGT
GTTTCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGACAGAATAAATCATCGTCCTTTCTC
ATTTTTGATGACGACTCTTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.872

96.891

0.503
  comA Streptococcus gordonii str. Challis substr. CH1

52.198

94.301

0.492
  comA/nlmT Streptococcus mutans UA159

49.468

97.409

0.482
  comA Streptococcus pneumoniae D39

50.273

94.819

0.477
  comA Streptococcus pneumoniae Rx1

50.273

94.819

0.477
  comA Streptococcus pneumoniae R6

50.273

94.819

0.477
  comA Streptococcus mitis SK321

49.18

94.819

0.466
  comA Streptococcus pneumoniae TIGR4

49.18

94.819

0.466